Gene: Sopen06g029910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g029910
  • Transcript Identifier Sopen06g029910.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 56092174-56104047 : positive

Gene Family Information

  • ID HOM05D001076
  • #Genes/#Species 569/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g029910.1

Descriptions

  • Description LA RNA-binding protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: cytosol, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , RNA-binding protein Lupus La , Protein of unknown function DM15 | BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010286
ISO
PLAZA Integrative Orthologyheat acclimation AT5G21160
GO:0061014
ISO
PLAZA Integrative Orthologypositive regulation of mRNA catabolic process AT5G21160
GO:0070370
ISO
PLAZA Integrative Orthologycellular heat acclimation AT5G21160
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT5G21160

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G21160
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G21160

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT5G21160
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT5G21160
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G21160
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G21160

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006607 Protein of unknown function DM15
IPR006630 La-type HTH domain
IPR036390 Winged helix DNA-binding domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
16.4.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.XRN4-exoribonuclease cofactor (LARP1)