Gene: AT5G21160

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G21160
  • Transcript Identifier AT5G21160.1
  • Gene Type Coding gene
  • Location Chr5 : 7199191-7203879 : negative

Gene Family Information

  • ID HOM05D001076
  • #Genes/#Species 569/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G21160.1
  • symbol LARP1a
  • Alias AtLARP1a,La related protein 1a
  • full_name La related protein 1a
  • uniprot Q940X9

Descriptions

  • Description LA RNA-binding protein
  • Computational description LA RNA-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Protein of unknown function DM15 (InterPro:IPR006607); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061014
IGI
Gene Ontologypositive regulation of mRNA catabolic process1
GO:0070370
IEP
Gene Ontologycellular heat acclimation1
GO:0010286
IMP
Gene Ontologyheat acclimation1
GO:0006402
IMP
Gene OntologymRNA catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA, HDA
TAS
Gene OntologymRNA binding1 2 3
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000932
IEA
GOA DatabaseP-body
GO:0000932
IDA
Gene OntologyP-body1
GO:0005829
IEA
GOA Databasecytosol
GO:0005829
IDA
Gene Ontologycytosol1
GO:0009536
HDA
Gene Ontologyplastid4
GO:0010494
IDA
Gene Ontologycytoplasmic stress granule1
GO:0005844
IDA
Gene Ontologypolysome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006630 La-type HTH domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR006607 Protein of unknown function DM15
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
16.4.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.XRN4-exoribonuclease cofactor (LARP1)