Gene: PGR102G0053

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR102G0053
  • Transcript Identifier PGR102G0053.01
  • Gene Type Coding gene
  • Location NC_045129.1 : 32801694-32808118 : negative

Gene Family Information

  • ID HOM05D001076
  • #Genes/#Species 569/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031389018.1
  • name LOC116201762
  • name XM_031533158.1
  • id gene-LOC116201762
  • uniprot A0A6P8DCM1

Descriptions

  • product la-related protein 1A, transcript variant X1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010286
ISO
PLAZA Integrative Orthologyheat acclimation AT5G21160
GO:0061014
ISO
PLAZA Integrative Orthologypositive regulation of mRNA catabolic process AT5G21160
GO:0070370
ISO
PLAZA Integrative Orthologycellular heat acclimation AT5G21160
GO:0006402
ISO
PLAZA Integrative OrthologymRNA catabolic process AT5G21160

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G21160
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G21160

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005844
ISO
PLAZA Integrative Orthologypolysome AT5G21160
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT5G21160
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G21160
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G21160

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006630 La-type HTH domain
IPR036390 Winged helix DNA-binding domain superfamily
IPR006607 Protein of unknown function DM15
IPR036388 Winged helix-like DNA-binding domain superfamily
Mapman id Description
16.4.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.XRN4-exoribonuclease cofactor (LARP1)