Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 2258.0 1196 100.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 2050.4 1208 90.9
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1962.6 1197 87.2
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1931.0 1197 86.6
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1923.7 1203 85.7
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1905.6 1176 86.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1899.4 1216 84.3
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1876.7 1198 84.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1858.2 1196 83.0
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1814.7 1196 81.9
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1807.3 1103 87.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1801.9 1181 82.3
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1773.8 1199 79.1
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1738.4 1197 76.6
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1730.3 1197 77.1
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1727.6 1199 76.9
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1716.0 1198 76.6
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1710.3 1175 77.3
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1703.0 1200 76.0
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1699.9 1203 76.0
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1699.1 1199 76.3
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1698.3 1199 76.6
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1695.6 1199 76.6
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1695.6 1197 76.2
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1691.8 1262 73.4
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1691.8 1199 76.7
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1691.4 1200 76.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1683.7 1204 75.2
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1682.5 1252 73.4
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1681.0 1207 74.7
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1680.2 1203 75.1
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1672.5 1204 75.0
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1671.4 1198 75.4
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1669.4 1205 75.0
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1668.3 1207 75.0
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1663.7 1209 74.8
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1654.8 1183 75.4
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1654.0 1199 75.3
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1653.3 1199 73.4
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1647.9 1200 73.3
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1642.1 1207 73.8
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1637.5 1207 74.0
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1635.5 1206 73.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1634.4 1195 72.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1629.8 1197 73.0
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1628.6 1207 71.7
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1627.5 1156 74.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1627.5 1208 72.2
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1620.9 1221 71.1
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1620.9 1219 72.5
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1617.4 1213 73.0
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1613.2 1209 72.0
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1610.1 1201 72.7
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1608.2 1138 76.1
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1608.2 1202 72.0
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1606.3 1220 71.6
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1605.5 1205 72.2
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1597.0 1202 71.9
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1594.3 1229 71.7
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1587.4 1200 71.4
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1586.6 1202 72.2
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1581.6 1199 71.6
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1580.1 1189 71.4
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1577.8 1200 70.6
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1567.7 1229 69.6
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1567.0 1168 72.1
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1559.7 1200 70.6
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1551.6 1202 70.4
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1547.7 1200 69.2
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1545.4 1170 72.1
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1541.6 1402 63.4
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1536.5 1194 69.7
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1531.5 1200 68.8
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1531.5 1200 68.8
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1530.0 1065 77.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1523.8 1201 69.4
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1517.7 1201 68.9
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1513.4 1222 68.9
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1508.4 1217 67.0
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1508.0 1200 67.2
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1507.3 1201 68.9
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1505.7 1201 69.9
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1504.6 1180 69.6
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1500.0 1170 70.0
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1492.6 1288 64.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1491.5 1198 68.7
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1488.0 1200 67.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1483.0 1206 67.8
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1481.1 1207 67.4
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1480.7 1212 67.5
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1478.4 1203 67.5
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1464.9 1214 67.0
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1455.3 1197 67.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1427.9 1184 66.3
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1414.8 1194 64.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1399.8 1187 66.7
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1383.6 930 79.1
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1382.1 877 80.5
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1364.0 1177 64.4
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1340.5 1215 61.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1333.9 1261 60.8
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1327.0 1219 61.0
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1291.2 872 76.7
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1220.7 838 75.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1193.3 814 76.7
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 0.0e+00 1159.8 969 69.2
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1130.5 1222 52.8
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1091.6 760 75.5
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1084.3 786 71.5
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.4e-308 1062.0 881 67.9
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.3e-280 970.3 669 74.9
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-269 932.9 807 65.1
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.8e-267 925.6 930 59.7
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-200 704.9 607 62.9
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 4.4e-191 672.9 532 66.0
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 3.8e-174 616.7 959 38.6
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 4.6e-172 609.8 476 70.6
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.5e-156 557.0 377 75.6
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-154 552.0 326 88.3
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.3e-142 511.9 445 65.2
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 5.9e-127 459.9 374 70.1
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 7.2e-125 453.0 1172 32.5
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 2.7e-119 434.5 367 68.4
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.1e-117 429.1 830 37.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 3.2e-117 427.6 237 86.5
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 5.0e-102 377.1 313 65.2
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 9.5e-101 372.9 553 43.0
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 3.2e-96 357.8 1276 27.8
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-88 331.3 212 77.8
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-86 326.2 181 86.2
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.0e-86 326.2 181 86.2
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.1e-84 318.5 174 87.4
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.9e-80 305.4 215 71.6
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.2e-80 304.7 215 71.6
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.4e-75 289.3 338 55.6
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.9e-72 278.9 385 51.4
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 7.8e-71 273.5 224 63.8
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 6.2e-68 263.8 386 44.8
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 6.9e-67 260.4 366 50.8
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 3.0e-62 245.0 342 50.3
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 5.6e-61 240.7 142 87.3
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.4e-59 235.3 200 70.5
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.1e-55 222.2 164 68.9
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 6.7e-54 217.2 232 56.5
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.6e-52 212.6 154 70.8
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 6.2e-52 210.7 219 59.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 3.8e-49 201.4 317 44.8
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 7.9e-47 193.7 326 39.3
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 6.7e-46 190.7 138 68.1
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.9e-37 162.5 137 74.5
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 6.3e-36 157.5 120 62.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.0e-35 153.7 135 62.2
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.2e-33 149.1 153 54.9
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 2.2e-33 149.1 83 86.7
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 1.4e-30 139.8 77 85.7
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.5e-29 136.3 105 72.4
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 5.7e-29 134.4 134 58.2
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 3.7e-28 131.7 119 68.9
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.5e-26 126.3 87 69.0
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 2.6e-26 125.6 76 84.2
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.2e-24 118.2 75 73.3
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.8e-19 102.8 65 80.0
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.1e-19 100.5 111 51.4
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.6e-18 99.0 85 56.5
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 3.5e-18 98.6 59 84.7
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 7.7e-18 97.4 68 67.6
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 2.2e-17 95.9 98 60.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 2.9e-17 95.5 57 77.2
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 3.8e-17 95.1 77 62.3
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 5.0e-17 94.7 56 76.8
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.5e-16 93.2 119 47.9
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 4.4e-13 81.6 56 69.6
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 8.2e-12 77.4 46 82.6
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.5e-08 66.6 45 66.7
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.1e-07 62.8 47 51.1
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.6e-07 62.0 92 50.0
TPR.G23196 Trifolium pratense HOM05D000141 ORTHO05D001311 1.0e-06 60.5 53 66.0
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 5.2e-06 58.2 146 34.2
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 6.8e-06 57.8 53 58.5


User provided reference genes

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