Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 5.3e-251 870.5 437 100.0
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 5.6e-192 674.5 440 78.0
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.6e-191 672.9 436 77.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 3.5e-186 655.2 446 74.0
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.2e-175 620.2 452 70.8
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.9e-171 606.3 445 70.8
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 3.2e-171 605.5 453 68.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 9.2e-171 604.0 427 72.4
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.0e-169 599.0 441 67.6
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 7.3e-168 594.3 446 68.2
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.2e-167 593.6 450 66.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.2e-167 593.6 439 70.4
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 3.1e-166 589.0 439 68.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 5.3e-166 588.2 450 66.4
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 9.0e-166 587.4 448 68.1
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.5e-165 586.6 453 67.1
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 2.0e-165 586.3 449 68.2
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.4e-165 585.1 451 69.0
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.8e-165 584.7 441 68.0
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 9.9e-165 583.9 451 69.0
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.2e-164 582.8 455 67.7
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.8e-164 582.0 451 68.7
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 3.8e-164 582.0 448 68.1
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 4.9e-164 581.6 452 65.7
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.9e-164 581.6 451 68.7
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 6.4e-164 581.3 469 65.5
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 6.4e-164 581.3 469 65.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.4e-164 581.3 446 68.6
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 8.4e-164 580.9 435 68.7
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 2.4e-163 579.3 445 66.3
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 3.2e-163 578.9 436 67.4
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 7.1e-163 577.8 446 66.6
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 7.1e-163 577.8 452 66.2
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.2e-162 577.0 449 65.9
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.2e-162 577.0 447 66.7
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.7e-162 575.9 456 65.4
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 3.5e-162 575.5 445 65.6
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 3.5e-162 575.5 443 67.0
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.0e-161 573.9 453 67.5
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.0e-161 573.9 450 66.9
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 1.0e-161 573.9 453 65.8
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.3e-161 573.5 450 64.4
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.3e-161 572.8 446 66.1
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 2.3e-161 572.8 449 66.1
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 3.0e-161 572.4 449 66.1
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 8.7e-161 570.9 451 66.3
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.3e-160 568.5 451 67.2
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.3e-160 568.5 428 68.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 9.6e-160 567.4 451 66.1
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 9.6e-160 567.4 451 67.2
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 3.6e-159 565.5 449 65.3
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 6.2e-159 564.7 452 64.4
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-158 563.9 430 68.8
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 9.0e-158 560.8 445 66.5
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.5e-157 558.5 446 65.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 9.9e-157 557.4 436 66.1
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 3.8e-156 555.4 446 65.2
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.2e-155 552.4 454 65.0
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.6e-154 550.1 446 65.7
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 4.6e-154 548.5 433 66.5
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.3e-153 547.0 453 62.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.3e-151 540.4 463 61.8
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.3e-151 540.4 442 62.7
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.8e-151 539.3 503 59.8
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 3.1e-150 535.8 437 66.1
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.3e-150 535.0 462 61.9
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 6.9e-150 534.6 406 68.0
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.6e-149 532.7 437 63.2
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 4.5e-149 531.9 399 70.2
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 4.9e-148 528.5 437 63.8
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 8.4e-148 527.7 454 61.5
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.4e-147 526.9 437 63.8
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 7.1e-147 524.6 437 63.4
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.2e-146 523.9 437 62.5
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.6e-146 523.5 437 63.4
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 2.1e-146 523.1 443 61.4
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 3.0e-145 519.2 448 62.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 8.7e-145 517.7 531 54.6
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.9e-144 516.5 442 63.1
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.3e-144 515.8 437 62.5
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.6e-143 513.5 462 61.3
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 2.1e-143 513.1 439 62.6
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.4e-142 509.6 437 62.2
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 3.1e-142 509.2 438 62.3
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 4.5e-141 505.4 438 62.1
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 4.2e-139 498.8 439 61.0
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 4.3e-136 488.8 417 63.3
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.4e-134 483.8 436 60.1
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.4e-134 483.0 444 57.0
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.4e-134 483.0 467 58.7
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.7e-132 476.9 459 54.9
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 2.9e-132 476.1 352 69.3
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.1e-130 468.4 426 59.9
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.0e-129 467.6 426 58.9
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.5e-128 463.8 455 56.0
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.3e-124 450.7 442 57.0
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.2e-124 449.9 264 82.6
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 4.8e-119 432.2 355 62.5
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 7.7e-117 424.9 262 79.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 8.0e-114 414.8 434 49.8
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 8.0e-114 414.8 322 66.1
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.0e-113 412.9 249 81.1
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 5.2e-113 412.1 427 52.9
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 8.8e-113 411.4 248 78.6
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.2e-109 401.0 451 53.4
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 5.5e-107 392.1 414 52.9
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.3e-105 386.7 227 82.8
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.5e-104 384.0 430 52.3
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 3.2e-99 366.3 417 49.6
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 6.1e-90 335.5 483 41.4
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 8.3e-87 325.1 366 52.5
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.4e-86 322.4 313 59.4
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 3.6e-82 309.7 288 58.3
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 8.9e-81 305.1 321 54.2
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.1e-75 288.1 326 51.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 4.9e-71 272.7 261 56.7
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.4e-70 271.2 285 55.1
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 5.4e-70 269.2 273 53.8
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 4.4e-64 249.6 251 57.0
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 1.5e-59 234.6 210 60.0
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 6.2e-58 229.2 412 37.9
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.4e-57 227.3 426 35.7
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.2e-56 224.9 215 57.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.6e-53 214.5 277 45.1
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 5.4e-46 189.5 136 62.5
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 4.6e-45 186.4 252 42.5
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.6e-42 177.9 106 84.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 6.9e-41 172.6 86 93.0
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 2.9e-39 167.2 98 83.7
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 4.9e-39 166.4 195 50.8
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.4e-35 152.5 187 47.1
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 2.0e-32 144.4 90 75.6
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 4.5e-32 143.3 74 89.2
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.6e-29 133.3 87 70.1
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.0e-28 130.6 86 73.3
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.5e-27 127.5 357 28.6
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 5.1e-20 103.2 188 39.4
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 3.3e-19 100.5 67 68.7
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.0e-16 91.3 92 53.3
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 5.9e-16 89.7 69 68.1
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-14 85.1 188 35.1
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.0e-12 79.0 61 60.7
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 2.3e-12 77.8 82 53.7
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.3e-12 77.8 59 62.7
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 1.4e-06 58.5 37 73.0
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.4e-06 58.5 44 63.6


User provided reference genes

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