Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 4.9e-64 247.7 126 100.0
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 5.9e-62 240.7 121 100.0
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 1.5e-60 236.1 126 96.8
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 2.1e-59 232.3 126 92.1
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 3.6e-59 231.5 123 94.3
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 3.6e-59 231.5 126 94.4
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 3.6e-59 231.5 126 94.4
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 4.7e-59 231.1 126 94.4
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 6.1e-59 230.7 128 92.2
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 8.0e-59 230.3 126 93.7
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 8.0e-59 230.3 123 93.5
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 8.0e-59 230.3 123 93.5
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 8.0e-59 230.3 126 93.7
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 8.0e-59 230.3 126 93.7
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 8.0e-59 230.3 126 93.7
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 1.0e-58 229.9 127 92.9
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 1.4e-58 229.6 126 92.9
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.8e-58 229.2 126 92.9
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.8e-58 229.2 126 92.9
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 2.3e-58 228.8 126 92.9
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 92.8
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 3.0e-58 228.4 124 92.7
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 4.0e-58 228.0 121 93.4
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 4.0e-58 228.0 124 92.7
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 4.0e-58 228.0 126 90.5
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 5.2e-58 227.6 126 92.9
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 5.2e-58 227.6 126 92.1
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 5.2e-58 227.6 126 92.1
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 6.8e-58 227.3 126 92.1
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 6.8e-58 227.3 128 91.4
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 8.9e-58 226.9 128 90.6
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 8.9e-58 226.9 128 90.6
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.2e-57 226.5 125 92.8
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 1.2e-57 226.5 126 91.3
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.2e-57 226.5 123 92.7
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.2e-57 226.5 126 92.1
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 1.5e-57 226.1 124 91.9
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 90.5
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 1.5e-57 226.1 126 91.3
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 2.0e-57 225.7 126 91.3
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 2.0e-57 225.7 126 90.5
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 91.1
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.0e-57 225.7 126 91.3
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 2.6e-57 225.3 124 91.9
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 2.6e-57 225.3 123 90.2
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 3.4e-57 224.9 126 91.3
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 3.4e-57 224.9 126 91.3
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 92.1
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 90.5
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 90.5
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 90.5
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 91.3
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 4.4e-57 224.6 124 92.7
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 91.3
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 4.4e-57 224.6 126 90.5
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 5.7e-57 224.2 126 91.3
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 5.7e-57 224.2 126 91.3
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 5.7e-57 224.2 126 91.3
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 7.5e-57 223.8 126 90.5
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 7.5e-57 223.8 116 97.4
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 7.5e-57 223.8 122 91.8
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 9.8e-57 223.4 126 89.7
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 9.8e-57 223.4 126 90.5
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.3e-56 223.0 126 88.9
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 1.7e-56 222.6 129 87.6
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.2e-56 222.2 123 88.6
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 2.2e-56 222.2 126 89.7
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 2.2e-56 222.2 124 89.5
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 2.9e-56 221.9 123 91.1
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 4.9e-56 221.1 126 89.7
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 4.9e-56 221.1 126 89.7
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 4.9e-56 221.1 126 89.7
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 4.9e-56 221.1 126 89.7
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 4.9e-56 221.1 126 88.9
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 6.4e-56 220.7 126 88.9
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 6.4e-56 220.7 126 88.9
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 6.4e-56 220.7 116 96.6
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 8.3e-56 220.3 123 89.4
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 8.3e-56 220.3 126 90.5
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 8.3e-56 220.3 126 90.5
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 8.3e-56 220.3 126 88.9
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 8.3e-56 220.3 126 90.5
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 8.3e-56 220.3 119 91.6
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 1.1e-55 219.9 124 90.3
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.4e-55 219.5 121 92.6
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.4e-55 219.5 127 89.0
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.4e-55 219.5 127 89.0
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 1.4e-55 219.5 126 88.9
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 89.8
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.8e-55 219.2 126 88.9
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 90.1
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 2.4e-55 218.8 124 90.3
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 2.4e-55 218.8 124 90.3
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 2.4e-55 218.8 122 87.7
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 3.2e-55 218.4 126 88.1
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 5.4e-55 217.6 123 88.6
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.7e-54 215.3 124 87.9
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.7e-54 215.3 124 87.9
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 2.7e-54 215.3 119 88.2
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 3.5e-54 214.9 116 93.1
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 1.3e-53 213.0 119 87.4
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 3.9e-53 211.5 121 86.0
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 5.0e-53 211.1 121 86.0
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 3.3e-52 208.4 115 89.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.2e-51 206.5 126 84.9
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 2.1e-51 205.7 120 84.2
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 2.3e-50 202.2 126 82.5
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 4.6e-46 188.0 115 80.0
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 6.0e-46 187.6 140 72.9
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 1.3e-45 186.4 119 78.2
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.7e-45 186.0 120 74.2
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 6.2e-43 177.6 107 85.0
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 6.8e-42 174.1 119 70.6
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 9.2e-39 163.7 85 92.9
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 1.2e-38 163.3 93 82.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.8e-34 149.4 92 85.9
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 5.4e-31 137.9 109 58.7
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 8.6e-29 130.6 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 1.2e-22 110.2 70 71.4
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 1.9e-20 102.8 100 55.0
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 1.6e-14 83.2 42 92.9
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 3.5e-14 82.0 68 58.8
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 6.4e-08 61.2 102 39.2
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 7.1e-07 57.8 81 38.3
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.6e-06 56.6 84 38.1
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 2.1e-06 56.2 31 80.6
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 2.7e-06 55.8 75 34.7
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 3.5e-06 55.5 95 32.6
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 3.5e-06 55.5 95 32.6
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 3.5e-06 55.5 84 34.5
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 4.6e-06 55.1 75 34.7
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 6.0e-06 54.7 96 33.3
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 6.0e-06 54.7 64 45.3
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 7.9e-06 54.3 74 36.5


User provided reference genes

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