Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0184F.1_g081320 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 4.9e-44 180.6 84 100.0
Hma1.2p1_0049F.1_g028670 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 7.5e-37 156.8 75 96.0
Hma1.2p1_0049F.1_g028680 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 7.5e-37 156.8 75 96.0
Hma1.2p1_0774F.1_g216370 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 2.2e-36 155.2 75 94.7
Dinv14260 Davidia involucrata HOM05D005175 ORTHO05D006302 1.8e-35 152.1 75 93.3
Hma1.2p1_0774F.1_g216280 Hydrangea macrophylla HOM05D005175 ORTHO05D006302 4.1e-35 151.0 75 93.3
CSS0003070 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 1.2e-34 149.4 75 89.3
CSS0010535 Camellia sinensis var. sinensis HOM05D005175 ORTHO05D006302 1.2e-34 149.4 75 89.3
CANSAT11G2394 Cannabis sativa HOM05D005175 ORTHO05D006302 1.2e-34 149.4 75 88.0
Thhalv10002689m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 1.6e-34 149.1 76 88.2
Rhsim02G0179100 Rhododendron simsii HOM05D005175 ORTHO05D006302 2.0e-34 148.7 75 90.7
FAN20G1449 Fragaria x ananassa HOM05D005175 ORTHO05D006302 2.7e-34 148.3 76 86.8
Atru.chr7.2095 Acer truncatum HOM05D005175 ORTHO05D006302 3.5e-34 147.9 75 89.3
Atru.chr7.2109 Acer truncatum HOM05D005175 ORTHO05D006302 3.5e-34 147.9 75 89.3
Cfa013314 Carpinus fangiana HOM05D005175 ORTHO05D006302 3.5e-34 147.9 75 90.7
Thhalv10002814m.g Eutrema salsugineum HOM05D005175 ORTHO05D006302 3.5e-34 147.9 76 86.8
FAN27G1436 Fragaria x ananassa HOM05D005175 ORTHO05D006302 3.5e-34 147.9 77 85.7
Manes.01G107300 Manihot esculenta HOM05D005175 ORTHO05D006302 3.5e-34 147.9 75 90.7
vmacro11061 Vaccinium macrocarpon HOM05D005175 ORTHO05D006302 4.6e-34 147.5 75 90.7
CiPaw.11G052500 Carya illinoinensis HOM05D005175 ORTHO05D006302 5.9e-34 147.1 75 89.3
AL5G25000 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 7.8e-34 146.7 75 89.3
BolC3t19335H Brassica oleracea HOM05D005175 ORTHO05D006302 7.8e-34 146.7 76 85.5
MD01G1039900 Malus domestica HOM05D005175 ORTHO05D006302 7.8e-34 146.7 75 88.0
Carub.0005s1205 Capsella rubella HOM05D005175 ORTHO05D006302 1.0e-33 146.4 75 88.0
Prupe.1G449000 Prunus persica HOM05D005175 ORTHO05D006302 1.0e-33 146.4 75 86.7
BcaC01g01925 Brassica carinata HOM05D005175 ORTHO05D006302 1.3e-33 146.0 76 85.5
BraA06t25187Z Brassica rapa HOM05D005175 ORTHO05D006302 1.3e-33 146.0 76 85.5
DCAR_004475 Daucus carota HOM05D005175 ORTHO05D006302 1.3e-33 146.0 76 86.8
Sp5g15420 Schrenkiella parvula HOM05D005175 ORTHO05D006302 1.3e-33 146.0 76 85.5
C03p70530 Brassica napus HOM05D005175 ORTHO05D006302 1.7e-33 145.6 74 87.8
AT3G46210 Arabidopsis thaliana HOM05D005175 ORTHO05D006302 2.3e-33 145.2 75 88.0
FvH4_2g35660 Fragaria vesca HOM05D005175 ORTHO05D006302 2.3e-33 145.2 76 84.2
RcHm_v2.0_Chr6g0306141 Rosa chinensis HOM05D005175 ORTHO05D006302 3.9e-33 144.4 76 84.2
Nitab4.5_0007810g0010 Nicotiana tabacum HOM05D005175 ORTHO05D006302 5.0e-33 144.1 76 85.5
GSVIVG01035631001 Vitis vinifera HOM05D005175 ORTHO05D006302 5.0e-33 144.1 75 89.3
Cc08_g09460 Coffea canephora HOM05D005175 ORTHO05D006302 6.6e-33 143.7 75 88.0
Gohir.A13G186200 Gossypium hirsutum HOM05D005175 ORTHO05D006302 8.6e-33 143.3 75 86.7
Gohir.D13G193000 Gossypium hirsutum HOM05D005175 ORTHO05D006302 8.6e-33 143.3 75 86.7
Gorai.013G218900 Gossypium raimondii HOM05D005175 ORTHO05D006302 8.6e-33 143.3 75 86.7
QL12p029089 Quercus lobata HOM05D005175 ORTHO05D006302 8.6e-33 143.3 75 86.7
TAR626G1708 Trochodendron aralioides HOM05D005175 ORTHO05D006302 8.6e-33 143.3 76 85.5
TAR636G0460 Trochodendron aralioides HOM05D005175 ORTHO05D006302 8.6e-33 143.3 76 85.5
A06p20990 Brassica napus HOM05D005175 ORTHO05D006302 1.1e-32 142.9 76 84.2
CARHR154650 Cardamine hirsuta HOM05D005175 ORTHO05D006302 1.1e-32 142.9 75 86.7
Duzib150G1530 Durio zibethinus HOM05D005175 ORTHO05D006302 1.1e-32 142.9 75 86.7
Lj8C577G3 Lonicera japonica HOM05D005175 ORTHO05D006302 1.1e-32 142.9 75 88.0
Lj8C586G3 Lonicera japonica HOM05D005175 ORTHO05D006302 1.1e-32 142.9 75 88.0
Solyc08g066700.3 Solanum lycopersicum HOM05D005175 ORTHO05D006302 1.1e-32 142.9 76 84.2
AL1G56380 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 1.5e-32 142.5 76 82.9
ClCG08G012270 Citrullus lanatus HOM05D005175 ORTHO05D006302 1.5e-32 142.5 75 88.0
MELO3C011145.2 Cucumis melo HOM05D005175 ORTHO05D006302 1.5e-32 142.5 75 88.0
CsaV3_2G030910 Cucumis sativus L. HOM05D005175 ORTHO05D006302 1.5e-32 142.5 75 88.0
MD15G1311800 Malus domestica HOM05D005175 ORTHO05D006302 1.5e-32 142.5 75 86.7
Sed0006550 Sechium edule HOM05D005175 ORTHO05D006302 1.5e-32 142.5 75 88.0
THA.LOC104814772 Tarenaya hassleriana HOM05D005175 ORTHO05D006302 1.5e-32 142.5 75 85.3
PGSC0003DMG400004310 Solanum tuberosum HOM05D005175 ORTHO05D006302 1.9e-32 142.1 75 85.3
Sopen08g020660 Solanum pennellii HOM05D005175 ORTHO05D006302 2.5e-32 141.7 76 84.2
COL.COLO4_17864 Corchorus olitorius HOM05D005175 ORTHO05D006302 3.3e-32 141.4 74 86.5
Nitab4.5_0007838g0040 Nicotiana tabacum HOM05D005175 ORTHO05D006302 5.6e-32 140.6 76 84.2
PSO782G3154 Papaver somniferum HOM05D005175 ORTHO05D006302 7.3e-32 140.2 76 84.2
Potri.018G043600 Populus trichocarpa HOM05D005175 ORTHO05D006302 1.2e-31 139.4 75 82.7
PGR044G2490 Punica granatum HOM05D005175 ORTHO05D006302 1.2e-31 139.4 78 83.3
CAN.G1674.2 Capsicum annuum HOM05D005175 ORTHO05D006302 1.6e-31 139.0 76 80.3
AUR62009295 Chenopodium quinoa HOM05D005175 ORTHO05D006302 1.6e-31 139.0 75 84.0
FAN15G2140 Fragaria x ananassa HOM05D005175 ORTHO05D006302 1.6e-31 139.0 76 82.9
Peaxi162Scf00227g00213 Petunia axillaris HOM05D005175 ORTHO05D006302 1.6e-31 139.0 74 82.4
EL10Ac2g04031 Beta vulgaris HOM05D005175 ORTHO05D006302 2.1e-31 138.7 75 81.3
PSO566G0264 Papaver somniferum HOM05D005175 ORTHO05D006302 2.1e-31 138.7 76 82.9
Hund19520 Selenicereus undatus HOM05D005175 ORTHO05D006302 2.8e-31 138.3 73 87.7
MBI04_g27064_MAGBIO Magnolia biondii HOM05D005175 ORTHO05D006302 3.6e-31 137.9 76 80.3
Nn7g37002 Nelumbo nucifera HOM05D005175 ORTHO05D006302 3.6e-31 137.9 75 84.0
Sabra18G0043700 Salix brachista HOM05D005175 ORTHO05D006302 3.6e-31 137.9 75 81.3
Eucgr.C02924 Eucalyptus grandis HOM05D005175 ORTHO05D006302 4.7e-31 137.5 75 81.3
Glyma.09G261100 Glycine max HOM05D005175 ORTHO05D006302 4.7e-31 137.5 75 85.3
Lj2g0027256 Lotus japonicus HOM05D005175 ORTHO05D006302 4.7e-31 137.5 75 82.7
Thecc.09G044300 Theobroma cacao HOM05D005175 ORTHO05D006302 6.2e-31 137.1 75 81.3
AUR62043392 Chenopodium quinoa HOM05D005175 ORTHO05D006302 8.0e-31 136.7 75 82.7
Ciclev10009310m.g Citrus clementina HOM05D005175 ORTHO05D006302 8.0e-31 136.7 75 82.7
Sc09g0009230 Simmondsia chinensis HOM05D005175 ORTHO05D006302 8.0e-31 136.7 76 80.3
Lj1g0020257 Lotus japonicus HOM05D005175 ORTHO05D006302 2.3e-30 135.2 75 81.3
TPR.G26940 Trifolium pratense HOM05D005175 ORTHO05D006302 2.3e-30 135.2 76 77.6
ECA248G2598 Erigeron canadensis HOM05D005175 ORTHO05D006302 3.1e-30 134.8 76 78.9
Medtr7g076910 Medicago truncatula HOM05D005175 ORTHO05D006302 4.0e-30 134.4 76 77.6
Glyma.18G230900 Glycine max HOM05D005175 ORTHO05D006302 5.2e-30 134.0 75 82.7
Lsat_1_v5_gn_1_47181 Lactuca sativa HOM05D005175 ORTHO05D006302 5.2e-30 134.0 75 76.0
Ah.15g099330 Amaranthus hybridus HOM05D005175 ORTHO05D006302 6.8e-30 133.7 73 82.2
HanXRQChr01g0029811 Helianthus annuus HOM05D005175 ORTHO05D006302 6.8e-30 133.7 75 77.3
Duzib168G0626 Durio zibethinus HOM05D005175 ORTHO05D006302 1.2e-29 132.9 75 81.3
Psat0s4355g0080 Pisum sativum HOM05D005175 ORTHO05D006302 1.5e-29 132.5 73 79.5
Phvul.008G066200 Phaseolus vulgaris HOM05D005175 ORTHO05D006302 3.4e-29 131.3 75 78.7
Psat3g109920 Pisum sativum HOM05D005175 ORTHO05D006302 3.4e-29 131.3 74 78.4
Psat3g124840 Pisum sativum HOM05D005175 ORTHO05D006302 3.4e-29 131.3 74 78.4
Ca_07899_v3 Cicer arietinum L. HOM05D005175 ORTHO05D006302 4.4e-29 131.0 75 77.3
Aqoxy7G01494 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 7.5e-29 130.2 75 78.7
TWI32G0813 Tripterygium wilfordii HOM05D005175 ORTHO05D006302 9.8e-29 129.8 74 79.7
CDE02G3559 Ceratophyllum demersum HOM05D005175 ORTHO05D006302 1.7e-28 129.0 76 76.3
Aqoxy5G03197 Aquilegia oxysepala HOM05D005175 ORTHO05D006302 1.1e-27 126.3 75 74.7
RcHm_v2.0_Chr6g0305271 Rosa chinensis HOM05D005175 ORTHO05D006302 1.1e-27 126.3 76 77.6
AUR62041709 Chenopodium quinoa HOM05D005175 ORTHO05D006302 4.1e-27 124.4 75 78.7
Lalb_Chr08g0233831 Lupinus albus HOM05D005175 ORTHO05D006302 7.0e-27 123.6 73 74.0
Migut.A00211 Erythranthe guttata HOM05D005175 ORTHO05D006302 1.2e-26 122.9 75 74.7
HPP92_018407 Vanilla planifolia HOM05D005175 ORTHO05D006302 1.6e-26 122.5 71 78.9
MSTRG.11700 Avicennia marina HOM05D005175 ORTHO05D006302 2.7e-26 121.7 75 73.3
Os03g0854200 Oryza sativa ssp. japonica HOM05D005175 ORTHO05D006302 3.9e-25 117.9 75 70.7
Zm00001eb210560 Zea mays HOM05D005175 ORTHO05D006302 3.3e-24 114.8 70 72.9
Ciclev10010872m.g Citrus clementina HOM05D005175 ORTHO05D006302 2.6e-21 105.1 75 69.3
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 6.0e-18 94.0 80 55.0
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 1.7e-17 92.4 80 53.8
Dinv27896 Davidia involucrata HOM05D005175 ORTHO05D006302 5.1e-17 90.9 43 93.0
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 6.6e-17 90.5 80 52.5
Mapoly0050s0095 Marchantia polymorpha HOM05D005175 ORTHO05D006302 8.6e-17 90.1 72 55.6
Pp3c4_10290 Physcomitrium patens HOM05D005175 ORTHO05D006302 1.1e-16 89.7 71 57.7
AagrBONN_evm.TU.Sc2ySwM_369.362 Anthoceros agrestis HOM05D005175 ORTHO05D006302 4.3e-16 87.8 70 55.7
AagrBONN_evm.TU.Sc2ySwM_228.4701 Anthoceros agrestis HOM05D005175 ORTHO05D006302 1.6e-15 85.9 70 54.3
SEGI_05611 Sequoiadendron giganteum HOM05D005175 ORTHO05D006302 2.8e-15 85.1 67 62.7
CBR_g16978 Chara braunii HOM05D005175 ORTHO05D006302 2.0e-13 79.0 69 53.6
ATR0705G208 Amborella trichopoda HOM05D005175 ORTHO05D006302 5.4e-11 70.9 41 75.6
Cre14.g624500 Chlamydomonas reinhardtii HOM05D005175 ORTHO05D006302 7.1e-11 70.5 70 47.1
FAN28G1291 Fragaria x ananassa HOM05D005175 ORTHO05D006302 7.8e-10 67.0 36 83.3
FAN09G0664 Fragaria x ananassa HOM05D005175 ORTHO05D006302 6.6e-09 63.9 33 87.9
AL9U12120 Arabidopsis lyrata HOM05D005175 ORTHO05D006302 1.9e-08 62.4 33 81.8
Gohir.A06G093501 Gossypium hirsutum HOM05D005175 ORTHO05D006302 1.2e-07 59.7 34 79.4
AL2G32490 Arabidopsis lyrata HOM05D005175 ORTHO05D021408 6.2e-07 57.4 32 71.9
Gorai.010G107600 Gossypium raimondii HOM05D005175 ORTHO05D006302 6.2e-07 57.4 34 76.5
Cre06.g284500 Chlamydomonas reinhardtii HOM05D004050 ORTHO05D005162 1.4e-06 56.2 60 43.3


User provided reference genes

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