Gene: PGSC0003DMG400004310

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400004310
  • Transcript Identifier PGSC0003DMT400011003
  • Gene Type Coding gene
  • Location ST4.03ch08 : 39169844-39174587 : positive

Gene Family Information

  • ID HOM05D005175
  • #Genes/#Species 145/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37468223
  • id PGSC0003DMG400004310.v4.03
  • uniprot M0ZYX0

Descriptions

  • Description Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0006259
IEA
GOA DatabaseDNA metabolic process
GO:0071028
IBA
GOA Databasenuclear mRNA surveillance
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing
GO:0016075
IBA
GOA DatabaserRNA catabolic process
GO:0034427
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475
IBA
GOA DatabaseU4 snRNA 3'-end processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042802
IEA
GOA Databaseidentical protein binding
GO:0004540
IEA
GOA Databaseribonuclease activity
GO:0004536
IEA
GOA Databasedeoxyribonuclease activity
GO:0003727
IEA
GOA Databasesingle-stranded RNA binding
GO:0003690
IEA
GOA Databasedouble-stranded DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000177
IBA
GOA Databasecytoplasmic exosome (RNase complex)
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0005730
IBA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR027408 PNPase/RNase PH domain superfamily
Mapman id Description
16.4.1.1.6 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP46