Gene: Solyc08g066700.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g066700.3
  • Transcript Identifier Solyc08g066700.3.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 53617128-53621879 : positive

Gene Family Information

  • ID HOM05D005175
  • #Genes/#Species 145/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g066700.3.1
  • uniprot A0A3Q7IK59
  • gene_id Solyc08g066700

Descriptions

  • Description Exosome complex exonuclease RRP46-like protein (AHRD V3.3 *** A0A1U8GGL3_CAPAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034475
IBA
GOA DatabaseU4 snRNA 3'-end processing
GO:0034427
IBA
GOA Databasenuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0016075
IBA
GOA DatabaserRNA catabolic process
GO:0071051
IBA
GOA Databasepolyadenylation-dependent snoRNA 3'-end processing
GO:0071028
IBA
GOA Databasenuclear mRNA surveillance

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding Os03g0854200
GO:0004536
ISO
PLAZA Integrative Orthologydeoxyribonuclease activity Os03g0854200
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding Os03g0854200
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding Os03g0854200
GO:0004540
ISO
PLAZA Integrative Orthologyribonuclease activity Os03g0854200

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IBA
GOA Databasenucleolus
GO:0000176
IBA
GOA Databasenuclear exosome (RNase complex)
GO:0000177
IBA
GOA Databasecytoplasmic exosome (RNase complex)

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR027408 PNPase/RNase PH domain superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
Mapman id Description
16.4.1.1.6 RNA processing.RNA surveillance.exosome complex.EXO9 core complex.component RRP46