Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 3.1e-63 245.0 124 100.0
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 3.1e-63 245.0 124 100.0
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 9.0e-63 243.4 124 99.2
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 1.9e-60 235.7 124 96.8
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 5.5e-60 234.2 124 93.5
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 2.1e-59 232.3 124 92.7
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 2.1e-59 232.3 124 92.7
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 2.1e-59 232.3 124 92.7
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 3.5e-59 231.5 125 94.4
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 4.6e-59 231.1 125 94.4
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 4.6e-59 231.1 125 92.8
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 4.6e-59 231.1 125 92.8
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 7.9e-59 230.3 123 93.5
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 7.9e-59 230.3 120 95.0
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 93.6
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 93.6
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 93.6
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 1.0e-58 229.9 128 91.4
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 1.3e-58 229.6 125 92.8
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 1.3e-58 229.6 125 92.8
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 92.8
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 92.8
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 1.8e-58 229.2 123 91.9
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 92.8
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 3.0e-58 228.4 127 91.3
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 5.1e-58 227.6 124 93.5
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 5.1e-58 227.6 120 92.5
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 5.1e-58 227.6 125 92.8
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 6.7e-58 227.3 120 92.5
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.0
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 92.0
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 6.7e-58 227.3 120 92.5
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.0
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 8.7e-58 226.9 120 91.7
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 8.7e-58 226.9 125 92.8
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 91.2
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 92.0
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 92.0
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.1e-57 226.5 125 92.0
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 91.2
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 91.2
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 91.2
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 1.9e-57 225.7 120 91.7
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 1.9e-57 225.7 125 90.4
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 1.9e-57 225.7 125 91.2
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 3.3e-57 224.9 120 90.8
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 90.4
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 90.4
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 90.4
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 92.0
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 4.3e-57 224.6 125 90.4
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 4.3e-57 224.6 125 90.4
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 4.3e-57 224.6 125 90.4
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 4.3e-57 224.6 125 90.4
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 5.7e-57 224.2 123 92.7
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 90.4
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 5.7e-57 224.2 120 90.8
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 90.4
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 91.2
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 7.4e-57 223.8 125 90.4
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 7.4e-57 223.8 125 90.4
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 7.4e-57 223.8 128 89.1
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 9.6e-57 223.4 125 90.4
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.3e-56 223.0 124 89.5
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 1.6e-56 222.6 125 89.6
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 2.1e-56 222.2 128 87.5
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 2.1e-56 222.2 128 87.5
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 88.8
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 2.8e-56 221.9 123 91.1
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 89.6
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 88.8
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 4.8e-56 221.1 116 94.8
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 4.8e-56 221.1 120 90.8
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 6.2e-56 220.7 125 89.6
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 6.2e-56 220.7 123 91.9
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 6.2e-56 220.7 123 91.9
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 6.2e-56 220.7 120 93.3
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 8.2e-56 220.3 116 94.8
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 1.1e-55 219.9 129 86.8
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.4e-55 219.5 126 88.9
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.4e-55 219.5 126 88.9
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.4e-55 219.5 119 89.9
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 1.4e-55 219.5 125 88.0
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 3.1e-55 218.4 123 88.6
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 3.1e-55 218.4 119 89.9
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 4.1e-55 218.0 125 88.8
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 4.1e-55 218.0 125 88.8
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 4.1e-55 218.0 118 89.8
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 4.1e-55 218.0 119 89.1
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 5.3e-55 217.6 123 87.0
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 6.9e-55 217.2 123 89.4
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 6.9e-55 217.2 123 89.4
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 9.0e-55 216.9 125 87.2
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 9.0e-55 216.9 125 87.2
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 9.0e-55 216.9 125 87.2
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 9.0e-55 216.9 125 87.2
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.2e-54 216.5 125 86.4
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.2e-54 216.5 125 86.4
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 1.2e-54 216.5 128 87.5
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 1.5e-54 216.1 125 87.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.5e-54 216.1 125 86.4
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 1.5e-54 216.1 125 88.0
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 2.6e-54 215.3 125 86.4
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 3.4e-54 214.9 125 86.4
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 3.4e-54 214.9 122 84.4
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 5.8e-54 214.2 125 85.6
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 5.8e-54 214.2 119 89.1
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 1.0e-53 213.4 124 85.5
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 8.4e-53 210.3 119 87.4
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 8.4e-53 210.3 119 87.4
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.2e-51 206.5 115 87.0
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 1.6e-51 206.1 114 85.1
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.8e-50 202.6 125 84.0
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 4.3e-49 198.0 125 80.0
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.5e-46 189.5 139 73.4
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 2.0e-46 189.1 116 80.2
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 5.9e-46 187.6 120 74.2
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 6.5e-45 184.1 118 76.3
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 1.4e-42 176.4 106 84.0
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 1.8e-42 176.0 119 69.7
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.1e-39 166.8 85 94.1
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 2.0e-38 162.5 93 82.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 7.9e-35 150.6 91 86.8
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.1e-31 140.2 109 59.6
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 2.9e-29 132.1 113 51.3
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 9.1e-23 110.5 70 70.0
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 2.5e-20 102.4 100 54.0
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 5.4e-15 84.7 76 55.3
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 7.0e-15 84.3 51 80.4
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 3.7e-08 62.0 102 40.2
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 7.0e-07 57.8 31 80.6
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 1.2e-06 57.0 81 37.0
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.6e-06 56.6 84 38.1
Glyma.19G188700 Glycine max HOM05D000428 ORTHO05D000582 2.7e-06 55.8 84 39.3
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 4.5e-06 55.1 75 34.7
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 4.5e-06 55.1 84 33.3
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 4.5e-06 55.1 80 38.8
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 4.5e-06 55.1 96 34.4
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 4.5e-06 55.1 64 45.3
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 5.9e-06 54.7 85 36.5
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 5.9e-06 54.7 75 34.7
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 5.9e-06 54.7 75 34.7
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 5.9e-06 54.7 75 34.7


User provided reference genes

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