Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.0e-196 689.9 354 100.0
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.0e-172 608.2 354 90.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.9e-158 562.8 351 83.2
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 6.4e-146 521.2 353 76.8
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.4e-145 519.2 357 75.4
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.4e-145 518.1 357 75.1
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.5e-144 515.4 354 75.4
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.8e-141 505.8 355 73.5
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 5.2e-140 501.5 351 72.4
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 5.2e-140 501.5 425 66.1
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.2e-139 500.4 353 72.0
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.5e-139 500.0 371 69.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.5e-139 500.0 352 73.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 5.8e-139 498.0 349 74.8
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 7.6e-139 497.7 356 72.8
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.7e-138 496.5 353 72.5
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.2e-138 496.1 355 72.4
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.9e-138 495.7 352 71.9
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 6.4e-138 494.6 352 72.7
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.4e-137 493.4 352 72.4
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 4.1e-137 491.9 352 73.0
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 4.1e-137 491.9 357 72.8
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 9.2e-137 490.7 354 72.6
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 1.2e-136 490.3 352 72.4
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.6e-136 490.0 352 71.9
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.0e-136 488.0 354 71.8
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.0e-136 488.0 354 72.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.0e-135 487.3 354 72.0
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.3e-135 486.9 353 70.8
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.7e-135 486.5 352 71.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 3.0e-135 485.7 354 71.5
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 6.6e-135 484.6 354 71.2
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.1e-134 483.8 352 70.7
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.9e-134 483.0 354 71.2
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.3e-134 481.9 352 71.6
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.6e-133 479.9 359 69.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-133 479.6 352 71.0
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 3.6e-133 478.8 352 70.5
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 4.7e-133 478.4 353 70.5
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.7e-133 478.4 320 76.6
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 4.7e-133 478.4 355 71.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.8e-132 476.5 352 69.6
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.8e-132 476.5 353 69.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.3e-130 470.3 355 69.3
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 3.8e-130 468.8 353 68.8
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.1e-129 467.2 349 71.9
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 9.3e-129 464.2 353 68.0
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.6e-128 463.4 357 68.6
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 4.6e-128 461.8 353 68.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 3.9e-127 458.8 353 67.1
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.9e-126 456.4 356 66.6
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 3.3e-126 455.7 353 69.1
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 7.3e-126 454.5 353 68.3
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.1e-125 453.0 354 68.1
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.1e-125 453.0 356 66.0
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-124 450.3 353 67.4
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.8e-124 449.9 350 67.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.8e-124 449.9 353 66.9
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 3.1e-124 449.1 349 69.6
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 4.0e-124 448.7 353 67.4
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 6.9e-124 448.0 349 67.9
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 9.0e-124 447.6 349 68.2
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.2e-123 447.2 349 69.1
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.0e-123 446.4 349 69.1
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 3.4e-123 445.7 353 67.4
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.4e-123 445.7 353 67.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.5e-123 445.3 353 67.4
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 7.6e-123 444.5 352 66.8
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.7e-122 443.4 353 67.4
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.2e-122 443.0 384 61.7
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.9e-122 442.6 353 67.1
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.8e-122 442.2 353 65.7
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 3.8e-122 442.2 313 72.5
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 3.8e-122 442.2 353 64.9
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.1e-121 440.7 353 65.4
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.2e-120 437.2 390 62.6
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.7e-120 436.0 350 67.1
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 4.6e-120 435.3 353 64.6
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.0e-120 434.9 349 66.8
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.8e-117 426.0 350 64.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.8e-117 426.0 353 64.0
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 1.3e-114 417.2 354 61.6
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.9e-114 415.2 353 61.8
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 8.4e-114 414.5 354 61.6
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 8.4e-114 414.5 350 64.6
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-113 413.7 345 64.9
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.9e-113 413.3 355 60.6
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.4e-113 412.9 352 64.5
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 4.2e-113 412.1 355 60.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 5.5e-113 411.8 354 61.3
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 2.1e-112 409.8 355 60.8
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.7e-112 409.5 354 59.6
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 3.5e-112 409.1 353 59.8
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 7.9e-112 407.9 351 62.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 1.0e-111 407.5 353 63.2
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.3e-111 407.1 354 60.5
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-111 407.1 353 60.6
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 3.0e-111 406.0 349 61.9
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 5.1e-111 405.2 299 71.2
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 4.3e-110 402.1 354 58.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.6e-110 401.7 363 58.7
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 8.2e-109 397.9 353 62.0
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.8e-107 391.7 352 60.5
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 6.5e-106 388.3 354 61.3
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 4.6e-104 382.1 350 58.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.4e-100 369.8 352 56.0
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-98 364.0 352 59.1
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 2.1e-96 356.7 349 57.9
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 7.7e-91 338.2 348 53.2
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 3.9e-87 325.9 303 60.4
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.1e-86 324.3 347 51.9
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 9.7e-86 321.2 351 52.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.4e-84 316.6 366 49.7
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 4.5e-83 312.4 365 48.8
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.3e-82 310.8 347 51.3
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.9e-81 307.0 175 86.9
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.1e-80 302.0 355 48.2
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 6.7e-71 271.9 354 48.9
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.4e-68 264.2 345 44.1
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.8e-68 263.8 223 63.2
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.9e-67 258.8 211 64.5
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 6.3e-61 238.8 302 42.4
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.1e-60 238.0 223 59.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 7.7e-59 231.9 142 80.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.3e-57 226.5 352 41.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.1e-56 223.8 228 56.1
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 8.9e-55 218.4 131 84.0
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 2.6e-54 216.9 297 46.1
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 8.3e-53 211.8 133 78.9
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.4e-52 210.3 330 38.8
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.0e-50 204.9 209 54.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.0e-50 204.9 185 58.9
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.6e-48 197.6 150 68.0
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.7e-48 196.1 131 76.3
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 7.5e-46 188.7 145 60.7
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 8.3e-45 185.3 143 69.2
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 5.4e-44 182.6 128 75.0
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.1e-39 166.8 139 60.4
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 3.1e-39 166.8 294 37.4
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.3e-37 161.4 139 58.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.1e-36 158.3 207 44.4
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.6e-35 152.9 274 34.7
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.3e-34 150.6 153 52.9
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.5e-33 147.9 207 41.1
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-31 141.7 199 45.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.1e-31 141.7 138 54.3
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.8e-31 141.0 144 52.1
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.9e-29 133.7 82 76.8
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 6.4e-29 132.5 223 36.8
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 9.2e-28 128.6 126 50.0
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.1e-25 121.7 117 54.7
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.6e-24 116.7 68 86.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 6.2e-24 115.9 203 37.9
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-22 111.3 154 40.3
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.7e-19 100.5 98 57.1
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-18 97.4 86 55.8
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.3e-18 97.4 86 55.8
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 8.7e-18 95.5 75 61.3
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 6.4e-13 79.3 120 41.7
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 3.9e-10 70.1 59 57.6
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-09 68.2 58 58.6
C08p00570 Brassica napus HOM05D004465 ORTHO05D005450 9.9e-06 55.5 42 61.9


User provided reference genes

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