Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 3.6e-276 954.5 558 100.0
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 7.8e-239 830.5 432 94.9
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 9.9e-202 707.2 430 80.7
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.5e-181 640.2 426 73.9
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 1.6e-175 620.2 435 69.9
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 6.7e-174 614.8 435 70.1
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 7.4e-173 611.3 434 69.4
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.1e-171 607.4 416 71.4
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.4e-171 607.1 429 69.2
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.4e-171 607.1 429 69.2
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.0e-169 600.9 430 68.4
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.3e-169 600.5 433 69.5
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.9e-169 599.4 431 66.8
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 3.8e-169 599.0 429 68.8
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 1.1e-168 597.4 420 69.5
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 4.2e-168 595.5 430 69.1
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 2.1e-167 593.2 428 69.9
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 1.4e-166 590.5 427 68.4
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 1.8e-166 590.1 425 66.8
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 1.1e-165 587.4 415 69.6
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.5e-165 587.0 435 68.0
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 2.0e-165 586.6 426 67.4
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.5e-165 586.3 432 68.3
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 7.4e-165 584.7 433 67.4
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 6.3e-164 581.6 442 66.5
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 6.3e-164 581.6 426 68.1
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 5.3e-163 578.6 443 67.0
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 5.3e-163 578.6 433 67.0
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 5.3e-163 578.6 433 67.0
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 5.9e-162 575.1 411 69.3
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 7.7e-162 574.7 442 66.5
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 7.7e-162 574.7 435 66.0
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 1.0e-161 574.3 410 69.8
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 1.3e-161 573.9 414 70.8
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 6.5e-161 571.6 432 67.4
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.9e-160 570.1 437 66.1
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 5.5e-160 568.5 415 69.9
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 5.5e-160 568.5 426 66.2
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 2.1e-159 566.6 426 66.0
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 2.1e-159 566.6 515 58.4
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 3.0e-158 562.8 399 69.7
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.5e-157 560.5 402 68.9
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 4.4e-157 558.9 431 65.9
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 5.7e-157 558.5 430 66.3
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 2.8e-156 556.2 429 65.0
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 3.7e-156 555.8 429 65.0
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 1.1e-155 554.3 429 65.3
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 4.1e-155 552.4 435 64.1
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 4.1e-155 552.4 430 62.6
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 3.5e-154 549.3 422 66.4
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 5.9e-154 548.5 430 62.1
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 5.9e-154 548.5 411 66.2
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 2.5e-152 543.1 431 62.9
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 4.2e-152 542.3 412 65.0
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 9.4e-152 541.2 417 65.9
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 4.7e-151 538.9 411 65.0
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 8.0e-151 538.1 416 64.4
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 8.0e-151 538.1 428 64.3
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 1.4e-150 537.3 419 64.4
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 3.0e-150 536.2 430 62.6
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 5.2e-150 535.4 433 62.6
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 8.8e-150 534.6 429 62.2
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 1.1e-149 534.3 430 62.8
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 1.1e-149 534.3 430 62.3
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 2.0e-149 533.5 430 62.8
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 5.7e-149 531.9 417 64.0
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 3.7e-148 529.3 426 63.6
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 8.2e-148 528.1 401 65.1
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 2.4e-147 526.6 405 64.7
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 1.2e-146 524.2 371 70.4
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 7.7e-146 521.5 394 65.7
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.2e-145 520.0 445 60.7
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 5.0e-145 518.8 448 61.2
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 7.2e-144 515.0 439 61.0
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.1e-143 513.5 441 61.5
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 2.3e-142 510.0 401 65.6
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 6.8e-142 508.4 410 64.9
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 3.4e-141 506.1 421 61.8
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 7.5e-141 505.0 428 60.0
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.7e-140 503.8 358 67.9
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.4e-139 500.7 430 59.3
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.8e-139 500.4 385 64.2
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 3.1e-139 499.6 415 61.4
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 3.1e-139 499.6 415 61.4
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 5.4e-139 498.8 415 60.7
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 1.3e-137 494.2 418 60.8
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.9e-137 493.0 391 65.0
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 2.3e-134 483.4 425 57.9
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 5.2e-134 482.3 413 60.0
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 6.8e-134 481.9 442 58.6
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 2.3e-129 466.8 437 56.3
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.1e-127 458.8 366 63.7
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.0e-126 458.0 401 60.3
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.4e-126 457.6 418 56.0
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 4.9e-124 449.1 519 51.1
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 3.5e-122 443.0 440 53.2
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 4.9e-116 422.5 355 60.0
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 4.3e-112 409.5 426 52.8
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 2.0e-109 400.6 320 63.4
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 5.4e-107 392.5 312 64.7
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 7.8e-106 388.7 263 75.3
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 2.3e-105 387.1 428 50.5
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 1.9e-104 384.0 463 47.7
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 7.8e-98 362.1 392 49.7
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 8.9e-94 348.6 316 57.3
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 5.1e-89 332.8 247 64.0
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 1.1e-83 315.1 296 57.8
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 1.6e-74 284.6 411 42.8
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.3e-71 275.0 459 39.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 7.9e-58 229.2 290 45.5
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 3.9e-57 226.9 184 60.9
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 9.0e-54 215.7 126 81.0
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 9.0e-54 215.7 126 81.0
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.7e-47 194.9 112 80.4
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 7.4e-40 169.5 132 65.2
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 9.7e-40 169.1 190 51.6
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.8e-39 167.5 219 39.7
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.1e-38 165.6 128 68.8
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 3.7e-31 140.6 116 58.6
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.1e-30 139.0 112 61.6
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-22 111.3 76 67.1
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 9.4e-19 99.4 118 50.0
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-09 68.9 47 63.8
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.9e-07 61.2 187 28.3
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 4.9e-07 60.5 187 28.9
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.1e-06 59.3 193 27.5
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.4e-06 58.9 148 31.8
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.8e-06 58.5 204 27.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 3.2e-06 57.8 204 27.9
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.2e-06 57.8 204 27.9
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 3.2e-06 57.8 222 25.2
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.2e-06 57.8 187 27.8
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 4.1e-06 57.4 198 27.3
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 5.4e-06 57.0 187 26.7
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 5.4e-06 57.0 198 27.3


User provided reference genes

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