Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.7e-285 985.3 500 100.0
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.2e-229 798.9 454 90.3
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.1e-207 726.9 445 82.9
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.2e-192 676.0 444 77.3
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-191 673.7 446 78.0
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.1e-190 669.5 457 76.6
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 3.3e-188 662.1 444 75.7
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.8e-186 656.4 443 74.7
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-185 652.9 446 75.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 2.6e-185 652.5 452 73.5
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.4e-185 652.1 446 75.1
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 5.8e-185 651.4 443 75.6
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 9.9e-185 650.6 456 74.8
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.3e-184 650.2 433 77.1
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.2e-184 649.4 452 75.2
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.7e-184 648.7 452 75.2
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 8.3e-184 647.5 452 74.8
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.1e-183 645.2 452 73.7
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.6e-182 643.3 444 73.4
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 1.6e-182 643.3 447 72.7
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 2.7e-182 642.5 448 74.8
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 2.7e-182 642.5 446 73.8
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.0e-181 640.6 452 74.1
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.3e-181 640.2 453 72.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 1.7e-181 639.8 450 70.4
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 6.6e-181 637.9 442 73.8
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.1e-180 637.1 446 72.9
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.9e-180 636.3 452 73.9
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.5e-180 636.0 446 74.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.7e-179 631.7 443 74.3
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 5.2e-178 628.2 442 69.9
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 8.9e-178 627.5 461 71.1
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 2.6e-177 625.9 467 69.8
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 2.6e-177 625.9 467 69.8
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 4.4e-177 625.2 448 73.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 7.6e-177 624.4 445 74.4
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 5.4e-175 618.2 447 71.6
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 2.1e-174 616.3 438 72.4
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.0e-174 614.8 447 71.1
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 7.8e-174 614.4 446 70.2
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 3.3e-172 609.0 448 71.7
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 9.6e-172 607.4 448 68.8
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 4.7e-171 605.1 456 70.8
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 6.2e-171 604.7 443 70.9
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.6e-169 599.4 433 70.7
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.4e-169 598.6 447 68.0
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.4e-169 598.6 431 72.4
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.9e-168 595.9 441 71.0
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.9e-167 593.2 455 66.6
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 2.4e-167 592.8 434 69.8
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 2.7e-166 589.3 445 67.0
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 4.6e-166 588.6 449 67.7
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 2.3e-165 586.3 449 67.7
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 8.7e-165 584.3 448 68.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.5e-164 583.6 447 67.8
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 4.3e-164 582.0 448 67.9
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 2.8e-163 579.3 439 68.6
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 8.1e-163 577.8 439 67.9
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.4e-162 577.0 457 64.6
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 4.0e-162 575.5 446 66.6
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.9e-162 574.7 441 68.0
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.2e-161 573.9 441 68.0
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 3.4e-161 572.4 446 67.0
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 4.5e-161 572.0 448 68.3
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 5.8e-161 571.6 448 65.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 5.8e-161 571.6 452 65.7
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 2.2e-160 569.7 441 66.9
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.2e-160 569.7 447 67.3
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.6e-158 563.5 439 67.4
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 6.7e-157 558.1 443 65.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 3.3e-156 555.8 449 64.6
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 9.6e-156 554.3 443 65.9
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.1e-155 553.1 501 61.5
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 2.8e-155 552.7 451 63.0
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 2.8e-155 552.7 443 65.9
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 4.0e-154 548.9 443 65.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 5.3e-154 548.5 448 64.5
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 6.9e-154 548.1 538 56.5
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 9.0e-154 547.7 398 70.9
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.3e-149 533.1 463 62.2
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 6.7e-149 531.6 441 63.7
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.9e-148 530.0 446 64.6
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.9e-148 530.0 443 63.7
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 6.2e-147 525.0 444 63.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.8e-146 523.5 405 68.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.0e-146 522.3 464 60.3
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.2e-145 520.8 463 61.3
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.6e-145 519.6 436 62.8
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 4.6e-142 508.8 414 65.2
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 1.3e-141 507.3 433 61.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 7.4e-140 501.5 433 60.5
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.8e-138 496.9 454 59.5
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.4e-137 492.7 447 59.7
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 3.8e-136 489.2 356 71.3
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.4e-133 480.7 464 56.7
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 3.7e-131 472.6 265 86.4
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.5e-127 459.9 452 58.2
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.3e-125 453.4 456 55.7
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.9e-125 452.6 361 64.3
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.4e-122 443.4 262 83.2
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 4.2e-119 432.6 254 82.7
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.8e-117 427.2 247 84.6
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 5.7e-116 422.2 332 65.4
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 3.7e-115 419.5 436 50.5
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 6.5e-112 408.7 434 54.4
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.9e-111 407.1 433 52.9
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.7e-107 392.9 417 50.6
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.4e-106 391.0 222 85.1
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.6e-102 377.5 312 67.6
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.8e-98 364.0 428 50.0
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 1.2e-97 361.3 482 45.4
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 3.5e-97 359.8 399 52.1
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 7.7e-97 358.6 285 63.9
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 6.8e-93 345.5 322 62.7
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.6e-81 306.2 330 55.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.2e-73 281.6 244 60.7
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 9.5e-71 271.9 293 54.3
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 4.7e-70 269.6 292 52.7
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 4.1e-66 256.5 247 57.9
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 4.3e-63 246.5 210 63.8
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.4e-58 230.7 215 55.3
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.6e-57 228.0 410 40.2
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.5e-55 220.7 252 46.8
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 2.6e-52 210.7 258 46.5
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 2.4e-50 204.1 207 55.1
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.9e-47 194.5 253 43.9
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 3.3e-47 193.7 136 65.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.4e-44 183.7 163 55.8
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.3e-43 181.8 106 84.9
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 6.0e-41 172.9 86 91.9
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 7.9e-41 172.6 98 85.7
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 4.6e-33 146.7 89 76.4
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 6.0e-33 146.4 77 87.0
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-29 135.6 86 76.7
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.6e-28 131.0 87 67.8
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.9e-26 124.8 256 31.2
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 5.3e-21 106.7 67 77.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.3e-19 102.1 69 76.8
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.2e-19 101.3 188 38.3
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 1.9e-18 98.2 96 55.2
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.1e-15 89.0 84 61.9
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.7e-14 85.1 59 67.8
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.8e-14 83.6 59 69.5
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.3e-14 83.2 188 34.0
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.7e-08 63.2 64 56.2
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 1.5e-07 62.0 89 46.1
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 1.7e-06 58.5 35 80.0
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 2.2e-06 58.2 44 63.6


User provided reference genes

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