Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00188 Corylus avellana HOM05D003934 ORTHO05D005108 8.3e-285 983.0 494 100.0
Cfa016252 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.8e-191 672.9 494 75.1
QL09p009520 Quercus lobata HOM05D003934 ORTHO05D005108 6.8e-178 627.9 535 65.8
CiPaw.05G251900 Carya illinoinensis HOM05D003934 ORTHO05D005108 4.4e-177 625.2 539 65.9
Manes.06G159600 Manihot esculenta HOM05D003934 ORTHO05D005108 4.2e-172 608.6 535 64.1
Eucgr.A01467 Eucalyptus grandis HOM05D003934 ORTHO05D005108 1.0e-170 604.0 542 62.4
Phvul.009G053700 Phaseolus vulgaris HOM05D003934 ORTHO05D005108 6.8e-170 601.3 535 63.7
CANSAT11G0158 Cannabis sativa HOM05D003934 ORTHO05D005108 1.2e-169 600.5 536 63.8
arahy.Tifrunner.gnm1.ann1.W6P66N Arachis hypogaea HOM05D003934 ORTHO05D005108 2.6e-169 599.4 543 63.5
Prupe.2G311500 Prunus persica HOM05D003934 ORTHO05D005108 2.6e-169 599.4 544 62.9
arahy.Tifrunner.gnm1.ann1.WX46MS Arachis hypogaea HOM05D003934 ORTHO05D005108 4.4e-169 598.6 543 63.4
Potri.015G017200 Populus trichocarpa HOM05D003934 ORTHO05D005108 7.5e-169 597.8 535 63.2
Potri.012G012800 Populus trichocarpa HOM05D003934 ORTHO05D005108 1.3e-168 597.0 535 62.8
MD07G1290300 Malus domestica HOM05D003934 ORTHO05D005108 2.2e-168 596.3 537 63.5
Medtr3g091250 Medicago truncatula HOM05D003934 ORTHO05D005108 2.8e-168 595.9 537 63.3
vmacro06541 Vaccinium macrocarpon HOM05D003934 ORTHO05D005108 3.7e-168 595.5 494 65.0
Ca_16696_v3 Cicer arietinum L. HOM05D003934 ORTHO05D005108 6.3e-168 594.7 565 60.7
MD01G1219700 Malus domestica HOM05D003934 ORTHO05D005108 1.4e-167 593.6 547 62.0
Duzib205G1942 Durio zibethinus HOM05D003934 ORTHO05D005108 1.8e-167 593.2 535 62.1
Lalb_Chr08g0240341 Lupinus albus HOM05D003934 ORTHO05D005108 3.1e-167 592.4 543 61.9
Lj1g0022752 Lotus japonicus HOM05D003934 ORTHO05D005108 4.1e-167 592.0 542 62.5
Glyma.04G236800 Glycine max HOM05D003934 ORTHO05D005108 1.6e-166 590.1 542 61.8
Actinidia34211 Actinidia chinensis HOM05D003934 ORTHO05D005108 2.0e-166 589.7 538 61.2
Psat5g078160 Pisum sativum HOM05D003934 ORTHO05D005108 2.0e-166 589.7 552 61.6
FAN10G3094 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.7e-166 589.3 499 64.3
Actinidia08639 Actinidia chinensis HOM05D003934 ORTHO05D005108 4.5e-166 588.6 547 59.8
Nn3g19008 Nelumbo nucifera HOM05D003934 ORTHO05D005108 7.8e-166 587.8 547 61.4
GSVIVG01038711001 Vitis vinifera HOM05D003934 ORTHO05D005108 7.8e-166 587.8 542 60.1
Duzib068G1159 Durio zibethinus HOM05D003934 ORTHO05D005108 1.0e-165 587.4 535 61.3
CSS0014973 Camellia sinensis var. sinensis HOM05D003934 ORTHO05D005108 1.7e-165 586.6 538 62.5
FvH4_7g06390 Fragaria vesca HOM05D003934 ORTHO05D005108 1.7e-165 586.6 518 62.2
Hma1.2p1_1188F.1_g265250 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 1.7e-165 586.6 535 60.0
Glyma.06G127500 Glycine max HOM05D003934 ORTHO05D005108 2.3e-165 586.3 538 62.3
Lj1C1015T5 Lonicera japonica HOM05D003934 ORTHO05D005108 2.9e-165 585.9 542 61.4
TAR375G0202 Trochodendron aralioides HOM05D003934 ORTHO05D005108 6.6e-165 584.7 546 61.2
FAN03G1965 Fragaria x ananassa HOM05D003934 ORTHO05D005108 8.6e-165 584.3 542 60.0
RcHm_v2.0_Chr1g0331941 Rosa chinensis HOM05D003934 ORTHO05D005108 8.6e-165 584.3 542 59.8
Thecc.03G196100 Theobroma cacao HOM05D003934 ORTHO05D005108 1.5e-164 583.6 535 60.9
FAN06G1603 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.5e-164 582.8 542 59.8
Sabra15G0013200 Salix brachista HOM05D003934 ORTHO05D005108 3.3e-164 582.4 535 61.5
CAN.G108.66 Capsicum annuum HOM05D003934 ORTHO05D005108 1.6e-163 580.1 534 60.3
FAN01G0480 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.1e-163 579.7 546 59.2
PGR042G0302 Punica granatum HOM05D003934 ORTHO05D005108 2.1e-163 579.7 542 60.7
COL.COLO4_11261 Corchorus olitorius HOM05D003934 ORTHO05D005108 6.1e-163 578.2 542 60.3
CsaV3_3G027880 Cucumis sativus L. HOM05D003934 ORTHO05D005108 8.0e-163 577.8 537 62.2
Gorai.006G201100 Gossypium raimondii HOM05D003934 ORTHO05D005108 1.4e-162 577.0 535 60.7
Sed0008190 Sechium edule HOM05D003934 ORTHO05D005108 3.0e-162 575.9 536 62.9
Gohir.D09G179100 Gossypium hirsutum HOM05D003934 ORTHO05D005108 5.2e-162 575.1 535 60.6
Nitab4.5_0007081g0020 Nicotiana tabacum HOM05D003934 ORTHO05D005108 1.2e-161 573.9 495 63.4
Nitab4.5_0000714g0110 Nicotiana tabacum HOM05D003934 ORTHO05D005108 2.6e-161 572.8 543 59.5
Gohir.A09G184300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 7.5e-161 571.2 536 60.4
Ciclev10004777m.g Citrus clementina HOM05D003934 ORTHO05D005108 3.7e-160 568.9 540 61.3
PGSC0003DMG400009079 Solanum tuberosum HOM05D003934 ORTHO05D005108 6.4e-160 568.2 537 61.8
ClCG05G008860 Citrullus lanatus HOM05D003934 ORTHO05D005108 8.3e-160 567.8 494 64.2
Sopen03g023200 Solanum pennellii HOM05D003934 ORTHO05D005108 8.3e-160 567.8 537 61.6
Solyc03g083430.3 Solanum lycopersicum HOM05D003934 ORTHO05D005108 1.1e-159 567.4 537 61.5
CDE10G0188 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 1.8e-159 566.6 541 59.0
AL6G16130 Arabidopsis lyrata HOM05D003934 ORTHO05D005108 1.2e-158 563.9 541 59.0
Gohir.A11G232300 Gossypium hirsutum HOM05D003934 ORTHO05D005108 1.2e-158 563.9 535 59.6
THA.LOC104820263 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 1.6e-158 563.5 547 58.5
AT5G06160 Arabidopsis thaliana HOM05D003934 ORTHO05D005108 4.6e-158 562.0 537 58.1
Gohir.D11G243500 Gossypium hirsutum HOM05D003934 ORTHO05D005108 6.0e-158 561.6 535 59.3
Cc02_g01680 Coffea canephora HOM05D003934 ORTHO05D005108 1.3e-157 560.5 547 58.5
MSTRG.8665 Avicennia marina HOM05D003934 ORTHO05D005108 1.7e-157 560.1 544 57.4
Carub.0006s0504 Capsella rubella HOM05D003934 ORTHO05D005108 3.9e-157 558.9 535 57.4
THA.LOC104816810 Tarenaya hassleriana HOM05D003934 ORTHO05D005108 3.9e-157 558.9 547 58.7
Migut.F00226 Erythranthe guttata HOM05D003934 ORTHO05D005108 8.6e-157 557.8 548 56.9
Lsat_1_v5_gn_9_58300 Lactuca sativa HOM05D003934 ORTHO05D005108 1.1e-156 557.4 541 57.5
Oeu041045.2 Olea europaea HOM05D003934 ORTHO05D005108 1.1e-156 557.4 572 56.1
Hund11672 Selenicereus undatus HOM05D003934 ORTHO05D005108 2.5e-156 556.2 532 58.6
Aa31LG11G7140 Aethionema arabicum HOM05D003934 ORTHO05D005108 3.3e-156 555.8 542 58.9
Thhalv10013305m.g Eutrema salsugineum HOM05D003934 ORTHO05D005108 9.5e-156 554.3 540 56.3
HPP92_021551 Vanilla planifolia HOM05D003934 ORTHO05D005108 9.5e-156 554.3 547 57.6
Cpa.g.sc3.69 Carica papaya HOM05D003934 ORTHO05D005108 2.8e-155 552.7 495 63.2
Ah.07g205840 Amaranthus hybridus HOM05D003934 ORTHO05D005108 8.0e-155 551.2 494 59.9
SGA_v2.0_scaffold44G16789 Striga asiatica HOM05D003934 ORTHO05D005108 6.8e-154 548.1 552 55.8
Sp6g36730 Schrenkiella parvula HOM05D003934 ORTHO05D005108 8.9e-154 547.7 546 57.1
HPP92_021541 Vanilla planifolia HOM05D003934 ORTHO05D005108 1.2e-153 547.4 547 57.8
EL10Ac3g05301 Beta vulgaris HOM05D003934 ORTHO05D005108 1.3e-152 543.9 543 56.7
Atru.chr1.153 Acer truncatum HOM05D003934 ORTHO05D005108 1.1e-151 540.8 513 60.4
Oeu041318.2 Olea europaea HOM05D003934 ORTHO05D005108 5.4e-151 538.5 495 62.2
PSO170G4033 Papaver somniferum HOM05D003934 ORTHO05D005108 9.2e-151 537.7 554 57.0
AUR62019377 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.7e-150 536.2 607 51.1
PSO063G5737 Papaver somniferum HOM05D003934 ORTHO05D005108 2.7e-150 536.2 554 57.0
AUR62006111 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.5e-150 535.8 553 55.3
ECA232G2652 Erigeron canadensis HOM05D003934 ORTHO05D005108 1.1e-148 530.8 550 54.9
ATR0602G008 Amborella trichopoda HOM05D003934 ORTHO05D005108 3.6e-147 525.8 549 55.7
CDE10G0405 Ceratophyllum demersum HOM05D003934 ORTHO05D005108 4.7e-147 525.4 535 56.6
CARHR206870 Cardamine hirsuta HOM05D003934 ORTHO05D005108 1.8e-146 523.5 542 56.8
C02p02610 Brassica napus HOM05D003934 ORTHO05D005108 3.1e-146 522.7 534 58.4
BolC2t06227H Brassica oleracea HOM05D003934 ORTHO05D005108 3.4e-145 519.2 534 58.1
BraA02t04872Z Brassica rapa HOM05D003934 ORTHO05D005108 3.4e-145 519.2 534 57.9
FAN24G3520 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.9e-144 516.2 553 54.8
SalBow4G2493 Salvia bowleyana HOM05D003934 ORTHO05D005108 1.1e-143 514.2 496 57.1
SalBow4G2054 Salvia bowleyana HOM05D003934 ORTHO05D005108 3.2e-143 512.7 496 57.1
TWI14G0523 Tripterygium wilfordii HOM05D003934 ORTHO05D005108 1.2e-139 500.7 536 56.3
Mapoly0116s0041 Marchantia polymorpha HOM05D003934 ORTHO05D005108 1.2e-137 494.2 547 53.6
Os03g0717600 Oryza sativa ssp. japonica HOM05D003934 ORTHO05D005108 3.8e-136 489.2 542 53.7
A03p02600 Brassica napus HOM05D003934 ORTHO05D005108 1.1e-135 487.6 545 51.7
BolC3t12849H Brassica oleracea HOM05D003934 ORTHO05D005108 1.4e-135 487.3 543 51.7
C03p02940 Brassica napus HOM05D003934 ORTHO05D005108 9.2e-135 484.6 543 51.9
BcaB01g05979 Brassica carinata HOM05D003934 ORTHO05D005108 3.5e-134 482.6 543 51.6
BraA03t09621Z Brassica rapa HOM05D003934 ORTHO05D005108 1.7e-133 480.3 545 51.2
FvH4_5g28470 Fragaria vesca HOM05D003934 ORTHO05D005108 1.7e-133 480.3 473 58.4
Peaxi162Scf00550g00530 Petunia axillaris HOM05D003934 ORTHO05D005108 1.9e-132 476.9 536 54.5
HanXRQChr09g0252981 Helianthus annuus HOM05D003934 ORTHO05D005108 6.9e-130 468.4 501 54.5
Pp3c5_21100 Physcomitrium patens HOM05D003934 ORTHO05D005108 2.6e-129 466.5 547 51.9
FvH4_1g22860 Fragaria vesca HOM05D003934 ORTHO05D005108 5.8e-129 465.3 538 53.7
FAN19G2010 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.4e-127 458.8 523 54.5
SMO119G0296 Selaginella moellendorffii HOM05D003934 ORTHO05D005108 4.6e-126 455.7 541 50.3
Sabra12G0018300 Salix brachista HOM05D003934 ORTHO05D005108 1.0e-125 454.5 551 51.2
PSO782G1765 Papaver somniferum HOM05D003934 ORTHO05D005108 1.3e-125 454.1 501 52.9
FAN26G2519 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.8e-123 446.4 538 52.8
FAN23G2330 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.2e-123 445.3 541 51.9
BcaB05g21680 Brassica carinata HOM05D003934 ORTHO05D005108 9.9e-121 438.0 789 40.8
MBI07_g07099_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 6.2e-107 392.1 271 72.3
FAN18G2200 Fragaria x ananassa HOM05D003934 ORTHO05D005108 5.3e-106 389.0 444 51.8
Cre06.g297750 Chlamydomonas reinhardtii HOM05D003934 ORTHO05D005108 3.2e-103 379.8 585 42.1
HanXRQChr09g0252971 Helianthus annuus HOM05D003934 ORTHO05D005108 1.8e-101 374.0 573 43.5
Aqoxy1G00997 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 2.6e-97 360.1 494 45.3
Zm00001eb156600 Zea mays HOM05D003934 ORTHO05D005108 4.2e-95 352.8 272 70.6
CBR_g4095 Chara braunii HOM05D003934 ORTHO05D005108 2.2e-91 340.5 496 41.1
MCO08G102 Micromonas commoda HOM05D003934 ORTHO05D005108 5.0e-88 329.3 549 41.3
DCAR_026768 Daucus carota HOM05D003934 ORTHO05D005108 1.2e-86 324.7 187 80.7
FvH4_7g05370 Fragaria vesca HOM05D003934 ORTHO05D005108 3.6e-86 323.2 561 42.6
FAN27G0411 Fragaria x ananassa HOM05D003934 ORTHO05D005108 6.1e-86 322.4 456 47.1
ATR0602G148 Amborella trichopoda HOM05D003934 ORTHO05D005108 4.1e-82 309.7 182 84.6
Gorai.007G258600 Gossypium raimondii HOM05D003934 ORTHO05D005108 5.9e-81 305.8 394 48.5
DCAR_009017 Daucus carota HOM05D003934 ORTHO05D005108 1.7e-80 304.3 183 80.3
FAN28G1126 Fragaria x ananassa HOM05D003934 ORTHO05D005108 3.8e-80 303.1 486 44.2
Sc25g0000870 Simmondsia chinensis HOM05D003934 ORTHO05D005108 1.6e-78 297.7 394 47.7
Aqoxy1G00994 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.0e-77 293.5 461 40.1
FAN01G0659 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-72 277.7 500 41.2
FvH4_2g12040 Fragaria vesca HOM05D003934 ORTHO05D005108 1.5e-71 274.6 380 45.5
PRCOL_00004948 Prasinoderma coloniale HOM05D003934 ORTHO05D005108 4.2e-71 273.1 552 35.1
SEGI_10674 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 7.2e-71 272.3 150 83.3
AUR62019431 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.7e-70 270.4 272 50.7
AUR62034796 Chenopodium quinoa HOM05D003934 ORTHO05D005108 2.0e-68 264.2 455 39.6
AUR62031013 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.1e-66 256.9 274 52.2
Haze_26996 Corylus avellana HOM05D003934 ORTHO05D005108 8.8e-61 238.8 574 32.8
TPR.G17291 Trifolium pratense HOM05D003934 ORTHO05D005108 1.2e-60 238.4 298 49.7
MBI07_g07098_MAGBIO Magnolia biondii HOM05D003934 ORTHO05D005108 1.0e-56 225.3 132 84.8
FAN10G2167 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.9e-56 223.8 479 37.0
Prupe.2G260300 Prunus persica HOM05D003934 ORTHO05D005108 3.0e-53 213.8 447 37.8
FAN10G1096 Fragaria x ananassa HOM05D003934 ORTHO05D005108 2.0e-52 211.1 472 36.2
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 9.8e-52 208.8 531 32.2
AUR62007347 Chenopodium quinoa HOM05D003934 ORTHO05D005108 1.3e-48 198.4 255 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1804 Anthoceros agrestis HOM05D003934 ORTHO05D005108 2.9e-48 197.2 325 40.6
SEGI_10754 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 3.3e-47 193.7 141 69.5
Aqoxy2G03740 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 9.2e-42 175.6 124 64.5
SEGI_13646 Sequoiadendron giganteum HOM05D003934 ORTHO05D005108 2.3e-37 161.0 98 79.6
BcaC08g44628 Brassica carinata HOM05D003934 ORTHO05D019879 6.0e-33 146.4 478 28.5
C06p21480 Brassica napus HOM05D003934 ORTHO05D019879 6.0e-33 146.4 478 28.5
BraA07t29851Z Brassica rapa HOM05D003934 ORTHO05D019879 2.3e-32 144.4 473 28.3
BolC6t37330H Brassica oleracea HOM05D003934 ORTHO05D019879 3.9e-32 143.7 476 28.2
AUR62031016 Chenopodium quinoa HOM05D003934 ORTHO05D005108 3.7e-27 127.1 113 52.2
A07p21690 Brassica napus HOM05D003934 ORTHO05D019879 5.1e-24 116.7 137 47.4
BcaB02g07780 Brassica carinata HOM05D003934 ORTHO05D019879 1.7e-19 101.7 132 46.2
Aqoxy1G01000 Aquilegia oxysepala HOM05D003934 ORTHO05D005108 3.5e-17 94.0 81 59.3
FAN07G2332 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.4e-13 82.0 119 46.2
HanXRQChr09g0252591 Helianthus annuus HOM05D003934 ORTHO05D019879 3.4e-12 77.4 50 70.0
Sabra11G0089700 Salix brachista HOM05D001236 ORTHO05D001090 1.3e-11 75.5 58 69.0
FAN07G1716 Fragaria x ananassa HOM05D003934 ORTHO05D005108 1.7e-11 75.1 67 59.7
Hma1.2p1_1973F.1_g309600 Hydrangea macrophylla HOM05D003934 ORTHO05D005108 3.8e-11 73.9 34 91.2
Sp5g08830 Schrenkiella parvula HOM05D003934 ORTHO05D005108 5.6e-07 60.1 225 29.3


User provided reference genes

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