Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 1.8e-287 991.9 502 100.0
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 7.6e-185 651.0 452 75.0
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.9e-164 583.2 441 71.0
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 2.2e-160 569.7 454 65.0
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 2.1e-158 563.1 442 64.9
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 1.6e-155 553.5 438 62.8
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 1.1e-154 550.8 439 63.1
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 1.4e-154 550.4 438 62.6
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.1e-154 549.3 444 62.4
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 4.1e-154 548.9 462 60.2
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.5e-153 547.0 466 60.9
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.5e-153 547.0 466 60.9
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 2.0e-153 546.6 440 63.2
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 1.0e-152 544.3 414 65.7
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 1.7e-152 543.5 442 63.3
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 8.5e-152 541.2 447 62.9
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 3.2e-151 539.3 454 61.9
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 4.2e-151 538.9 458 60.0
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 4.2e-151 538.9 475 58.7
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 9.4e-151 537.7 416 64.4
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 9.4e-151 537.7 398 67.3
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 3.6e-150 535.8 416 64.4
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 6.7e-149 531.6 426 62.2
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 5.7e-148 528.5 470 58.1
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 4.8e-147 525.4 417 63.3
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 3.1e-146 522.7 418 62.7
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 3.1e-146 522.7 410 63.9
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 4.1e-146 522.3 434 62.0
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 4.1e-146 522.3 469 59.1
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 4.1e-146 522.3 434 61.5
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 9.1e-146 521.2 449 58.6
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 2.0e-145 520.0 415 62.7
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 3.4e-145 519.2 418 62.7
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.5e-145 518.8 422 61.4
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 4.5e-145 518.8 422 61.4
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 7.7e-145 518.1 459 57.5
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 7.7e-145 518.1 467 57.0
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.7e-144 516.9 412 61.9
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 8.5e-144 514.6 405 64.0
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 1.4e-143 513.8 469 57.8
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 1.6e-142 510.4 421 61.3
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 6.1e-142 508.4 448 58.7
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 1.4e-141 507.3 442 59.7
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.3e-141 506.5 460 58.3
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 8.8e-141 504.6 451 59.9
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.5e-140 503.8 421 60.6
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 7.4e-140 501.5 477 58.9
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 2.8e-139 499.6 492 55.7
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 6.3e-139 498.4 484 55.6
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 6.3e-139 498.4 397 63.5
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 1.8e-138 496.9 426 59.9
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 2.4e-138 496.5 448 58.5
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.2e-137 494.2 436 57.6
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 2.0e-137 493.4 410 63.2
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 5.9e-137 491.9 427 59.0
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.9e-137 491.9 456 56.1
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.9e-137 491.9 456 56.1
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 2.9e-136 489.6 391 62.9
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 2.9e-136 489.6 463 55.5
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 5.0e-136 488.8 442 57.2
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 6.5e-136 488.4 443 57.3
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 8.5e-136 488.0 442 57.5
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 1.1e-135 487.6 411 60.3
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 3.2e-135 486.1 372 64.5
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 4.2e-135 485.7 478 54.6
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 7.2e-135 485.0 401 62.3
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 9.4e-135 484.6 550 49.8
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.6e-134 483.8 479 53.9
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 4.7e-134 482.3 470 55.1
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 1.0e-133 481.1 481 53.6
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.3e-133 479.9 472 55.9
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 3.0e-133 479.6 448 57.1
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 3.9e-133 479.2 416 59.1
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 3.9e-133 479.2 444 55.9
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 5.2e-133 478.8 478 54.2
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.1e-132 477.6 464 54.1
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.5e-132 477.2 411 59.9
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 3.3e-132 476.1 416 58.9
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 3.7e-131 472.6 419 59.7
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 8.2e-131 471.5 464 53.7
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.4e-130 469.9 458 55.0
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.4e-130 469.9 458 55.0
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 2.4e-130 469.9 464 53.4
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.2e-129 467.6 402 60.4
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.3e-128 464.2 417 58.3
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 1.7e-128 463.8 429 56.9
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 2.9e-128 463.0 457 53.0
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 8.0e-126 454.9 485 52.0
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 2.3e-125 453.4 389 59.4
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.0e-124 450.3 406 54.7
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.7e-123 447.2 479 51.4
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 9.1e-122 441.4 440 50.5
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 5.9e-121 438.7 361 63.2
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.1e-119 434.5 454 52.2
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 1.2e-118 431.0 473 50.3
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.8e-114 417.2 362 57.5
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 1.8e-109 400.6 414 52.9
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.5e-105 386.3 437 50.6
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.8e-102 376.7 375 53.6
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.0e-100 370.5 382 52.1
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 8.3e-99 365.2 561 40.3
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.4e-98 364.4 320 59.4
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 5.8e-92 342.4 303 57.8
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 4.7e-86 322.8 306 55.2
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 3.2e-82 310.1 294 55.4
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 6.0e-73 279.3 410 41.2
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.1e-69 268.5 463 39.7
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.4e-66 258.1 236 55.1
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 4.0e-61 240.0 247 51.8
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 3.4e-60 236.9 406 36.7
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.1e-54 217.6 126 81.0
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 2.1e-54 217.6 126 81.0
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 6.9e-45 186.0 279 37.6
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 6.9e-45 186.0 185 53.0
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 1.6e-41 174.9 126 68.3
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 1.8e-37 161.4 112 68.8
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 3.3e-31 140.6 134 55.2
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-23 115.5 70 74.3
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 3.7e-22 110.5 191 37.2
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.5e-20 105.1 128 48.4
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 3.2e-18 97.4 119 48.7
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 6.7e-16 89.7 95 45.3
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-12 78.2 47 72.3
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 9.4e-10 69.3 197 29.4
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 3.6e-09 67.4 197 28.9
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 8.0e-09 66.2 197 28.9
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 8.0e-09 66.2 197 28.9
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 8.0e-09 66.2 197 28.9
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 8.0e-09 66.2 159 31.4
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.0e-08 65.9 197 28.9
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.0e-08 65.9 262 24.8
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.4e-08 65.5 190 29.5
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.4e-08 65.5 190 29.5
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.4e-08 65.5 143 30.8
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 1.8e-08 65.1 196 29.1
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.0e-08 64.3 245 25.3
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 4.0e-08 63.9 196 28.1
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 5.2e-08 63.5 158 31.6
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 6.8e-08 63.2 163 30.1
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.6e-07 61.2 141 32.6
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 4.4e-07 60.5 258 24.8
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 4.4e-07 60.5 197 27.4
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 4.4e-07 60.5 190 27.4
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 5.7e-07 60.1 281 24.6
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 5.7e-07 60.1 198 26.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 7.5e-07 59.7 190 26.8
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 7.5e-07 59.7 210 28.1
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 9.7e-07 59.3 199 26.1
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 9.7e-07 59.3 190 27.4
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 9.7e-07 59.3 195 27.7
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 1.7e-06 58.5 160 28.1
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 1.7e-06 58.5 327 24.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 1.7e-06 58.5 327 24.2
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.7e-06 58.5 210 25.7
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.2e-06 58.2 195 26.7
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.2e-06 58.2 197 26.9
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 3.7e-06 57.4 197 26.4
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 3.7e-06 57.4 218 25.2
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.7e-06 57.4 196 26.0
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 6.3e-06 56.6 354 21.2
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 6.3e-06 56.6 157 29.9
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 6.3e-06 56.6 199 25.6
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 8.3e-06 56.2 167 26.9
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 8.3e-06 56.2 197 26.9
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.3e-06 56.2 351 23.9


User provided reference genes

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