Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 2190.6 1177 100.0
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1947.6 1188 88.0
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1940.6 1191 86.7
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1839.3 1161 86.6
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1734.2 1196 78.6
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1711.8 1197 76.9
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1681.4 1129 79.0
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1679.5 1138 80.8
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1675.6 1198 77.0
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1670.2 1199 75.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1669.1 1198 75.8
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1667.1 1197 76.0
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1666.7 1165 77.3
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1666.0 1207 75.5
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1662.1 1201 75.4
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1658.7 1193 76.4
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1652.9 1194 76.2
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1651.0 1199 74.9
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1649.8 1208 73.4
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1648.6 1193 76.3
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1645.6 1172 75.9
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1644.8 1209 73.7
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1644.8 1210 73.2
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1641.3 1193 75.9
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1630.9 1219 73.9
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1629.0 1205 73.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1628.6 1202 73.5
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1186 75.0
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1201 73.5
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1626.3 1194 75.6
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1625.9 1203 73.7
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1621.7 1190 74.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1620.9 1197 74.8
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1617.4 1188 72.8
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1614.4 1197 74.1
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1614.0 1181 74.3
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1611.3 1196 73.5
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1610.1 1261 71.2
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1609.3 1203 74.1
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1606.3 1206 73.7
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1605.9 1196 73.7
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1604.0 1190 74.3
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1602.4 1200 73.3
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1602.0 1223 73.8
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1597.4 1217 73.5
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1593.6 1199 73.4
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1591.6 1202 73.3
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1590.5 1195 74.6
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1590.1 1196 73.2
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1589.3 1199 71.6
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1588.9 1196 72.7
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1588.5 1215 72.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1583.9 1190 73.4
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1581.6 1203 72.8
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1581.2 1208 70.9
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1578.9 1165 74.4
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1578.9 1219 72.0
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1578.1 1197 72.0
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1577.0 1206 73.1
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1568.9 1170 73.5
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1552.3 1201 70.7
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1548.9 1250 69.8
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1547.3 1180 72.2
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1540.4 1188 71.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1539.2 1202 69.2
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1536.5 1219 69.8
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1531.9 1191 70.0
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1527.7 1167 72.8
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1520.4 1185 70.7
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1516.9 1298 66.5
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1513.4 1112 73.8
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1506.5 1200 68.1
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1199 67.8
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1199 67.8
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1500.3 1201 69.5
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1494.6 1202 69.3
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1491.9 1389 63.2
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1491.5 1177 69.9
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1489.6 1063 76.5
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1487.2 1196 69.1
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1486.1 1200 67.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1483.8 1199 69.1
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1483.0 1201 69.3
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1195 69.3
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1480.7 1207 68.9
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1480.3 1203 68.7
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1474.5 1215 67.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1473.4 1197 67.8
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1473.4 1198 70.6
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1461.0 1241 65.8
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1451.4 1196 68.9
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1450.6 1185 67.7
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1429.8 1199 68.3
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1417.9 1180 66.7
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1408.3 1188 66.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1394.4 1174 67.3
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1381.7 1213 64.9
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1329.3 1197 63.6
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1327.4 1231 62.3
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1319.3 875 76.0
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1318.9 872 78.7
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1311.2 930 74.2
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1304.7 1253 60.7
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1185.2 838 73.6
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1166.4 790 77.7
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1139.0 1214 54.0
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1098.2 760 76.6
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1084.7 889 71.8
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 2.1e-310 1069.3 777 70.5
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 6.3e-283 978.0 667 76.5
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.2e-275 953.0 807 68.3
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 2.9e-275 952.6 967 59.8
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.1e-271 940.6 924 61.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.5e-210 735.7 608 67.1
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 9.7e-207 724.9 465 85.2
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 4.5e-180 636.3 553 62.0
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 3.1e-173 613.6 961 39.9
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 7.8e-156 555.8 363 86.2
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.9e-152 542.3 294 89.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 5.4e-149 533.1 377 72.7
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 3.6e-145 520.4 442 67.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 6.6e-131 473.0 1149 32.7
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 7.6e-119 433.0 237 88.2
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.9e-118 430.3 364 72.0
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 5.1e-115 420.2 821 37.6
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.2e-101 374.0 313 65.2
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 6.7e-99 366.7 917 31.0
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.8e-96 358.6 548 42.5
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 1.6e-92 345.5 322 65.5
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 9.7e-90 336.3 174 95.4
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.5e-85 321.6 212 73.6
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 4.2e-85 320.9 181 82.3
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 4.2e-85 320.9 181 82.3
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.7e-78 298.9 210 73.3
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.5e-78 296.6 210 72.9
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 1.4e-75 289.3 224 65.2
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 8.5e-70 270.0 358 57.0
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 5.2e-67 260.8 305 55.4
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.8e-64 252.3 391 46.8
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 9.1e-64 250.0 202 63.4
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 5.5e-61 240.7 337 48.7
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 9.8e-58 229.9 136 86.8
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.4e-56 224.2 199 70.9
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.9e-53 215.7 164 67.1
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 4.0e-51 208.0 321 42.7
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.5e-50 206.1 154 68.8
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.8e-48 199.1 138 70.3
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 4.9e-41 174.5 233 51.9
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.7e-38 166.0 96 85.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.0e-38 165.2 181 57.5
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 3.1e-35 155.2 95 80.0
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 1.5e-34 152.9 120 62.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.4e-34 151.4 96 79.2
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.1e-31 142.5 77 88.3
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.9e-29 136.0 83 79.5
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.5e-29 135.6 101 76.2
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.2e-28 133.3 138 55.1
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 2.2e-25 122.5 87 66.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.2e-25 122.5 113 63.7
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.1e-24 120.2 216 42.6
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 1.6e-23 116.3 119 64.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.3e-22 113.2 65 87.7
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.0e-22 112.1 75 68.0
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 7.6e-18 97.4 68 66.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 7.6e-18 97.4 96 63.5
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.3e-17 96.7 72 68.1
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.7e-17 96.3 57 75.4
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 3.8e-17 95.1 56 75.0
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-16 92.8 77 58.4
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 6.0e-15 87.8 99 59.6
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 5.1e-14 84.7 55 81.8
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.9e-13 82.8 55 65.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 9.0e-11 73.9 46 82.6
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.3e-09 70.1 116 40.5
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 2.9e-09 68.9 113 42.5
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 6.4e-09 67.8 147 36.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 4.6e-07 61.6 42 66.7
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 6.0e-07 61.2 39 64.1


User provided reference genes

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