Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369811 Helianthus annuus HOM05D003944 ORTHO05D018516 4.4e-118 427.9 210 100.0
HanXRQChr01g0008211 Helianthus annuus HOM05D003944 ORTHO05D005521 4.4e-70 268.5 168 79.8
ECA248G1744 Erigeron canadensis HOM05D003944 ORTHO05D005521 4.4e-62 241.9 165 74.5
Lsat_1_v5_gn_5_157080 Lactuca sativa HOM05D003944 ORTHO05D005521 7.6e-62 241.1 201 64.7
Oeu053358.4 Olea europaea HOM05D003944 ORTHO05D005521 1.1e-52 210.7 158 67.1
PSO339G2693 Papaver somniferum HOM05D003944 ORTHO05D005521 1.9e-52 209.9 162 64.8
EL10Ac3g07244 Beta vulgaris HOM05D003944 ORTHO05D005521 3.2e-52 209.1 158 66.5
Cc06_g19400 Coffea canephora HOM05D003944 ORTHO05D005521 5.4e-52 208.4 158 67.7
MD12G1095800 Malus domestica HOM05D003944 ORTHO05D005521 5.4e-52 208.4 158 66.5
PSO384G4619 Papaver somniferum HOM05D003944 ORTHO05D005521 5.4e-52 208.4 162 64.8
TAR636G2487 Trochodendron aralioides HOM05D003944 ORTHO05D005521 7.1e-52 208.0 158 67.1
HPP92_028465 Vanilla planifolia HOM05D003944 ORTHO05D005521 9.3e-52 207.6 158 66.5
MD14G1090600 Malus domestica HOM05D003944 ORTHO05D005521 1.2e-51 207.2 158 65.8
Peaxi162Scf00076g00421 Petunia axillaris HOM05D003944 ORTHO05D005521 1.2e-51 207.2 158 65.8
PGR031G2678 Punica granatum HOM05D003944 ORTHO05D005521 1.2e-51 207.2 158 67.1
MSTRG.19800 Avicennia marina HOM05D003944 ORTHO05D005521 2.1e-51 206.5 158 65.2
CSS0010587 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 2.7e-51 206.1 158 66.5
CSS0027330 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 2.7e-51 206.1 158 66.5
Migut.J01650 Erythranthe guttata HOM05D003944 ORTHO05D005521 2.7e-51 206.1 157 65.0
Dinv06172 Davidia involucrata HOM05D003944 ORTHO05D005521 3.5e-51 205.7 158 65.8
Lalb_Chr14g0365791 Lupinus albus HOM05D003944 ORTHO05D005521 3.5e-51 205.7 158 65.8
SGA_v2.0_scaffold105G30285 Striga asiatica HOM05D003944 ORTHO05D005521 4.6e-51 205.3 158 65.2
SGA_v2.0_scaffold69G23158 Striga asiatica HOM05D003944 ORTHO05D005521 6.0e-51 204.9 158 65.2
Solyc12g021230.2 Solanum lycopersicum HOM05D003944 ORTHO05D005521 7.8e-51 204.5 161 64.6
Actinidia01829 Actinidia chinensis HOM05D003944 ORTHO05D005521 1.0e-50 204.1 158 65.2
Ah.04g150900 Amaranthus hybridus HOM05D003944 ORTHO05D005521 1.3e-50 203.8 158 64.6
CARHR209140 Cardamine hirsuta HOM05D003944 ORTHO05D005521 1.3e-50 203.8 160 65.0
Prupe.7G033800 Prunus persica HOM05D003944 ORTHO05D005521 1.3e-50 203.8 158 65.2
Nitab4.5_0004224g0030 Nicotiana tabacum HOM05D003944 ORTHO05D005521 1.7e-50 203.4 158 65.2
RcHm_v2.0_Chr2g0125831 Rosa chinensis HOM05D003944 ORTHO05D005521 1.7e-50 203.4 158 64.6
Sopen12g011160 Solanum pennellii HOM05D003944 ORTHO05D005521 1.7e-50 203.4 158 65.2
CSS0025536 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 2.3e-50 203.0 158 65.8
CAN.G8.29 Capsicum annuum HOM05D003944 ORTHO05D005521 2.3e-50 203.0 158 63.9
Nitab4.5_0005254g0010 Nicotiana tabacum HOM05D003944 ORTHO05D005521 2.3e-50 203.0 158 65.2
SGA_v2.0_scaffold3G01719 Striga asiatica HOM05D003944 ORTHO05D005521 2.3e-50 203.0 159 64.2
AL6G13750 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 3.0e-50 202.6 165 63.6
AT5G04130 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 3.0e-50 202.6 158 64.6
SalBow6G5823 Salvia bowleyana HOM05D003944 ORTHO05D005521 3.0e-50 202.6 164 62.8
GSVIVG01033639001 Vitis vinifera HOM05D003944 ORTHO05D005521 3.0e-50 202.6 158 66.5
Carub.0006s0308 Capsella rubella HOM05D003944 ORTHO05D005521 3.9e-50 202.2 158 64.6
CDE04G2160 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 3.9e-50 202.2 158 65.2
Ciclev10004438m.g Citrus clementina HOM05D003944 ORTHO05D005521 3.9e-50 202.2 158 63.9
ClCG04G005580 Citrullus lanatus HOM05D003944 ORTHO05D005521 5.1e-50 201.8 163 63.2
Hund19091 Selenicereus undatus HOM05D003944 ORTHO05D005521 5.1e-50 201.8 158 65.8
Atru.chr1.1433 Acer truncatum HOM05D003944 ORTHO05D005521 6.6e-50 201.4 158 64.6
COL.COLO4_21471 Corchorus olitorius HOM05D003944 ORTHO05D005521 6.6e-50 201.4 154 66.2
Duzib128G0786 Durio zibethinus HOM05D003944 ORTHO05D005521 6.6e-50 201.4 158 65.8
Eucgr.A02236 Eucalyptus grandis HOM05D003944 ORTHO05D005521 6.6e-50 201.4 158 65.2
Glyma.19G130000 Glycine max HOM05D003944 ORTHO05D005521 6.6e-50 201.4 158 65.8
Gohir.A02G105903 Gossypium hirsutum HOM05D003944 ORTHO05D005521 6.6e-50 201.4 157 65.6
FvH4_6g25390 Fragaria vesca HOM05D003944 ORTHO05D005521 8.7e-50 201.1 158 63.9
VMungo1383G0013 Vigna mungo HOM05D003944 ORTHO05D005521 8.7e-50 201.1 158 65.2
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea HOM05D003944 ORTHO05D005521 1.1e-49 200.7 154 66.9
THA.LOC104826889 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 1.1e-49 200.7 158 64.6
Thecc.05G129200 Theobroma cacao HOM05D003944 ORTHO05D005521 1.1e-49 200.7 154 66.2
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea HOM05D003944 ORTHO05D005521 1.5e-49 200.3 154 66.9
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 1.9e-49 199.9 158 64.6
FAN02G4022 Fragaria x ananassa HOM05D003944 ORTHO05D005521 1.9e-49 199.9 158 63.9
FAN05G2619 Fragaria x ananassa HOM05D003944 ORTHO05D005521 1.9e-49 199.9 158 63.3
Nn7g36800 Nelumbo nucifera HOM05D003944 ORTHO05D005521 1.9e-49 199.9 157 65.6
Aqoxy2G00418 Aquilegia oxysepala HOM05D003944 ORTHO05D005521 2.5e-49 199.5 161 62.7
Lj1C1090G8 Lonicera japonica HOM05D003944 ORTHO05D005521 2.5e-49 199.5 158 63.9
QL07p011017 Quercus lobata HOM05D003944 ORTHO05D005521 2.5e-49 199.5 161 63.4
BraA03t09530Z Brassica rapa HOM05D003944 ORTHO05D005521 3.3e-49 199.1 158 65.8
CDE02G1045 Ceratophyllum demersum HOM05D003944 ORTHO05D005521 4.3e-49 198.7 158 63.9
Phvul.001G123100 Phaseolus vulgaris HOM05D003944 ORTHO05D005521 4.3e-49 198.7 158 64.6
Aa31LG1G21200 Aethionema arabicum HOM05D003944 ORTHO05D005521 5.6e-49 198.4 158 63.9
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis HOM05D003944 ORTHO05D005521 5.6e-49 198.4 164 61.6
AUR62018352 Chenopodium quinoa HOM05D003944 ORTHO05D005521 5.6e-49 198.4 158 63.3
Gohir.D03G073100 Gossypium hirsutum HOM05D003944 ORTHO05D005521 5.6e-49 198.4 157 64.3
Gorai.003G086700 Gossypium raimondii HOM05D003944 ORTHO05D005521 5.6e-49 198.4 157 64.3
A03p01540 Brassica napus HOM05D003944 ORTHO05D005521 7.3e-49 198.0 158 65.2
Potri.016G036200 Populus trichocarpa HOM05D003944 ORTHO05D005521 7.3e-49 198.0 158 62.7
vmacro07788 Vaccinium macrocarpon HOM05D003944 ORTHO05D005521 7.3e-49 198.0 157 63.7
CiPaw.09G048200 Carya illinoinensis HOM05D003944 ORTHO05D005521 9.6e-49 197.6 161 62.7
Ca_08389_v3 Cicer arietinum L. HOM05D003944 ORTHO05D005521 9.6e-49 197.6 158 64.6
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 9.6e-49 197.6 158 65.2
AUR62030314 Chenopodium quinoa HOM05D003944 ORTHO05D005521 1.3e-48 197.2 158 62.7
BcaB05g21771 Brassica carinata HOM05D003944 ORTHO05D005521 1.6e-48 196.8 158 65.2
Sp6g38620 Schrenkiella parvula HOM05D003944 ORTHO05D005521 1.6e-48 196.8 158 64.6
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 2.1e-48 196.4 158 64.6
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 2.1e-48 196.4 158 64.6
MELO3C019090.2 Cucumis melo HOM05D003944 ORTHO05D005521 2.1e-48 196.4 148 66.9
Lj1g0011822 Lotus japonicus HOM05D003944 ORTHO05D005521 2.1e-48 196.4 158 64.6
Sabra06G0026400 Salix brachista HOM05D001103 ORTHO05D000954 2.8e-48 196.1 157 63.7
Sc13g0001110 Simmondsia chinensis HOM05D003944 ORTHO05D005521 2.8e-48 196.1 158 64.6
Medtr7g089790 Medicago truncatula HOM05D003944 ORTHO05D005521 4.8e-48 195.3 158 63.3
Glyma.03G127300 Glycine max HOM05D003944 ORTHO05D005521 6.2e-48 194.9 158 63.9
BolC2t06138H Brassica oleracea HOM05D003944 ORTHO05D005521 8.1e-48 194.5 158 63.9
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 8.1e-48 194.5 158 63.3
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 1.1e-47 194.1 158 63.3
unitig_899.g15645 Utricularia gibba HOM05D003944 ORTHO05D005521 1.1e-47 194.1 158 61.4
Sed0017237 Sechium edule HOM05D003944 ORTHO05D005521 1.4e-47 193.7 154 64.3
A05p38840 Brassica napus HOM05D003944 ORTHO05D005521 1.8e-47 193.4 158 63.3
C05p57880 Brassica napus HOM05D003944 ORTHO05D005521 1.8e-47 193.4 158 63.3
BolC5t34443H Brassica oleracea HOM05D003944 ORTHO05D005521 1.8e-47 193.4 158 63.3
BraA05t22675Z Brassica rapa HOM05D003944 ORTHO05D005521 1.8e-47 193.4 158 63.3
CANSAT64G1720 Cannabis sativa HOM05D003944 ORTHO05D005521 1.8e-47 193.4 161 61.5
Carub.0003s0945 Capsella rubella HOM05D003944 ORTHO05D005521 1.8e-47 193.4 158 63.3
Psat3g079040 Pisum sativum HOM05D003944 ORTHO05D005521 1.8e-47 193.4 158 62.7
Potri.006G039400 Populus trichocarpa HOM05D003944 ORTHO05D005521 1.8e-47 193.4 157 62.4
DCAR_020575 Daucus carota HOM05D003944 ORTHO05D005521 2.4e-47 193.0 158 64.6
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 3.1e-47 192.6 159 61.6
CARHR084750 Cardamine hirsuta HOM05D003944 ORTHO05D005521 4.0e-47 192.2 158 62.7
CsaV3_4G029550 Cucumis sativus L. HOM05D003944 ORTHO05D005521 4.0e-47 192.2 148 64.9
Thhalv10020150m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 4.0e-47 192.2 158 62.7
Manes.09G004300 Manihot esculenta HOM05D003944 ORTHO05D005521 4.0e-47 192.2 158 62.7
Sp3g08540 Schrenkiella parvula HOM05D003944 ORTHO05D005521 4.0e-47 192.2 158 63.3
Aa31LG3G2850 Aethionema arabicum HOM05D003944 ORTHO05D005521 5.3e-47 191.8 158 63.3
TWI77G0996 Tripterygium wilfordii HOM05D003944 ORTHO05D005521 5.3e-47 191.8 158 62.7
AL3G21600 Arabidopsis lyrata HOM05D003944 ORTHO05D005521 6.9e-47 191.4 158 63.3
AT3G10270 Arabidopsis thaliana HOM05D003944 ORTHO05D005521 6.9e-47 191.4 158 63.3
Cfa020002 Carpinus fangiana HOM05D003944 ORTHO05D005521 9.0e-47 191.0 161 62.1
ATR0759G018 Amborella trichopoda HOM05D003944 ORTHO05D005521 1.2e-46 190.7 161 60.2
Haze_20232 Corylus avellana HOM05D003944 ORTHO05D005521 1.2e-46 190.7 161 62.1
Zm00001eb128720 Zea mays HOM05D003944 ORTHO05D005521 3.4e-46 189.1 160 61.9
CBR_g48715 Chara braunii HOM05D003944 ORTHO05D005521 7.6e-46 188.0 155 62.6
SHI24526 Sapria himalayana HOM05D003944 ORTHO05D005521 7.6e-46 188.0 162 58.0
TPR.G34631 Trifolium pratense HOM05D003944 ORTHO05D005521 9.9e-46 187.6 172 57.0
Os01g0268300 Oryza sativa ssp. japonica HOM05D003944 ORTHO05D005521 1.3e-45 187.2 160 60.0
Pp3c19_5200 Physcomitrium patens HOM05D003944 ORTHO05D005521 3.8e-45 185.7 158 61.4
SMO356G0312 Selaginella moellendorffii HOM05D003944 ORTHO05D005521 1.4e-44 183.7 160 58.1
Mapoly0001s0398 Marchantia polymorpha HOM05D003944 ORTHO05D005521 6.0e-43 178.3 158 57.0
Rhsim03G0038900 Rhododendron simsii HOM05D003944 ORTHO05D005521 2.1e-40 169.9 223 45.7
FAN09G4102 Fragaria x ananassa HOM05D003944 ORTHO05D005521 4.8e-40 168.7 158 57.0
Cre10.g440750 Chlamydomonas reinhardtii HOM05D003944 ORTHO05D005521 1.8e-39 166.8 159 54.7
Cpa.g.sc5.164 Carica papaya HOM05D003944 ORTHO05D018516 4.0e-39 165.6 134 64.9
MCO09G035 Micromonas commoda HOM05D003944 ORTHO05D005521 3.8e-37 159.1 152 52.0
Sabra16G0038600 Salix brachista HOM05D003944 ORTHO05D005521 2.5e-36 156.4 138 58.0
Sabra16G0038300 Salix brachista HOM05D003944 ORTHO05D005521 4.2e-36 155.6 134 59.0
COL.COLO4_37451 Corchorus olitorius HOM05D003944 ORTHO05D005521 5.5e-36 155.2 125 64.0
PRCOL_00004441 Prasinoderma coloniale HOM05D003944 ORTHO05D005521 6.7e-34 148.3 150 52.7
SEGI_14179 Sequoiadendron giganteum HOM05D003944 ORTHO05D018516 1.8e-26 123.6 84 69.0
HPP92_006582 Vanilla planifolia HOM05D003944 ORTHO05D018516 8.7e-26 121.3 120 55.0
arahy.Tifrunner.gnm1.ann1.8LUP6T Arachis hypogaea HOM05D003944 ORTHO05D018516 1.7e-21 107.1 66 77.3
HanXRQChr14g0432561 Helianthus annuus HOM05D003944 ORTHO05D018516 1.9e-20 103.6 53 92.5
CSS0028458 Camellia sinensis var. sinensis HOM05D003944 ORTHO05D005521 1.3e-08 64.3 101 41.6
Gohir.A13G076800 Gossypium hirsutum HOM05D003944 ORTHO05D018516 4.8e-08 62.4 39 74.4
Gohir.A11G322000 Gossypium hirsutum HOM05D003944 ORTHO05D018516 2.0e-06 57.0 39 74.4


User provided reference genes

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