Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.6e-28 128.6 63 100.0
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 5.5e-24 113.6 63 90.5
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 9.3e-24 112.8 63 90.5
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 9.3e-24 112.8 63 90.5
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 9.3e-24 112.8 63 90.5
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 3.5e-23 110.9 63 87.3
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 3.5e-23 110.9 63 87.3
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 3.5e-23 110.9 63 87.3
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 6.0e-23 110.2 63 87.3
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 7.9e-23 109.8 63 88.9
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 7.9e-23 109.8 63 88.9
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 7.9e-23 109.8 63 88.9
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 7.9e-23 109.8 63 87.3
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 7.9e-23 109.8 63 88.9
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 7.9e-23 109.8 63 85.7
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 1.0e-22 109.4 63 87.3
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-22 109.4 63 87.3
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-22 109.4 63 87.3
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-22 109.4 63 87.3
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.8e-22 108.6 63 87.3
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 1.8e-22 108.6 63 87.3
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 2.3e-22 108.2 62 87.1
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 2.3e-22 108.2 62 87.1
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 2.3e-22 108.2 63 85.7
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 3.0e-22 107.8 63 85.7
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 3.0e-22 107.8 63 85.7
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 3.0e-22 107.8 63 85.7
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 3.0e-22 107.8 63 85.7
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 3.9e-22 107.5 63 85.7
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 3.9e-22 107.5 63 87.3
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 5.1e-22 107.1 63 85.7
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 5.1e-22 107.1 63 85.7
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 5.1e-22 107.1 63 85.7
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 5.1e-22 107.1 63 85.7
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 6.7e-22 106.7 63 87.3
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 6.7e-22 106.7 57 91.2
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 6.7e-22 106.7 60 88.3
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 8.7e-22 106.3 63 85.7
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 8.7e-22 106.3 57 89.5
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 1.1e-21 105.9 63 84.1
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 1.1e-21 105.9 58 87.9
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.5e-21 105.5 63 84.1
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 1.9e-21 105.1 58 89.7
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 1.9e-21 105.1 58 89.7
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 1.9e-21 105.1 58 89.7
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 1.9e-21 105.1 58 89.7
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 1.9e-21 105.1 58 89.7
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 2.5e-21 104.8 64 84.4
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 2.5e-21 104.8 62 83.9
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 2.5e-21 104.8 63 82.5
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 3.3e-21 104.4 56 91.1
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 5.7e-21 103.6 58 87.9
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 5.7e-21 103.6 58 87.9
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 5.7e-21 103.6 58 86.2
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 5.7e-21 103.6 58 86.2
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 5.7e-21 103.6 58 87.9
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 5.7e-21 103.6 58 87.9
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 5.7e-21 103.6 57 89.5
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 7.4e-21 103.2 64 84.4
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 7.4e-21 103.2 59 86.4
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 1.6e-20 102.1 57 87.7
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 2.8e-20 101.3 58 87.9
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 2.8e-20 101.3 58 87.9
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 2.8e-20 101.3 58 87.9
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 3.7e-20 100.9 59 83.1
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 4.1e-19 97.4 76 69.7
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 4.1e-19 97.4 57 80.7
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 6.9e-19 96.7 57 84.2
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 9.0e-19 96.3 55 87.3
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 9.0e-19 96.3 58 81.0
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 2.6e-18 94.7 53 86.8
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 3.4e-18 94.4 53 88.7
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 7.6e-18 93.2 53 86.8
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 7.6e-18 93.2 53 86.8
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-17 92.8 52 88.5
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.0e-17 92.8 52 88.5
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 1.7e-17 92.0 52 86.5
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 1.7e-17 92.0 57 73.7
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 2.9e-17 91.3 53 83.0
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 3.8e-17 90.9 53 84.9
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 4.3e-13 77.4 55 60.0
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 3.7e-12 74.3 60 68.3
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 3.1e-11 71.2 83 51.8
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 2.6e-10 68.2 60 68.3
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 5.0e-09 63.9 33 90.9
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 1.0e-06 56.2 27 96.3
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 1.0e-06 56.2 27 96.3
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 5.1e-06 53.9 35 80.0
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 6.7e-06 53.5 27 92.6
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 8.8e-06 53.1 27 88.9


User provided reference genes

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