Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 2.7e-54 217.6 108 100.0
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 2.8e-51 207.6 112 94.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 4.9e-40 170.2 91 87.9
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 2.3e-37 161.4 86 87.2
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 9.6e-36 156.0 107 70.1
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.8e-33 146.7 113 65.5
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 7.6e-33 146.4 113 66.4
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-32 145.6 113 65.5
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.7e-32 145.2 96 70.8
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.7e-32 145.2 112 65.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.9e-32 144.4 93 71.0
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.9e-32 144.4 107 70.1
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 4.9e-32 143.7 99 70.7
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 8.4e-32 142.9 109 67.9
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.1e-31 142.5 109 65.1
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.1e-31 142.5 109 65.1
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 1.1e-31 142.5 105 64.8
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.1e-31 142.5 107 69.2
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.1e-31 142.5 98 68.4
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.4e-31 141.4 109 65.1
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.4e-31 141.4 102 71.6
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 4.2e-31 140.6 107 68.2
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 4.2e-31 140.6 112 62.5
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 7.1e-31 139.8 114 61.4
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 9.3e-31 139.4 116 62.9
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 9.3e-31 139.4 107 68.2
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.2e-30 139.0 110 64.5
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.2e-30 139.0 109 64.2
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.2e-30 139.0 109 64.2
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.2e-30 139.0 109 64.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 2.1e-30 138.3 114 64.0
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 4.6e-30 137.1 104 67.3
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 4.6e-30 137.1 104 67.3
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 6.0e-30 136.7 98 66.3
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 6.0e-30 136.7 109 64.2
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 6.0e-30 136.7 77 81.8
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 7.9e-30 136.3 108 63.0
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.0e-29 136.0 114 63.2
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.0e-29 136.0 112 62.5
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.0e-29 136.0 112 62.5
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.0e-29 136.0 79 79.7
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.0e-29 136.0 99 66.7
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.3e-29 135.6 106 65.1
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 2.3e-29 134.8 113 62.8
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.0e-29 134.4 107 64.5
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.0e-29 134.4 107 64.5
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 3.0e-29 134.4 79 77.2
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 3.9e-29 134.0 107 63.6
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 3.9e-29 134.0 88 70.5
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 5.1e-29 133.7 119 59.7
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 8.7e-29 132.9 121 59.5
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 8.7e-29 132.9 92 69.6
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 8.7e-29 132.9 109 61.5
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 8.7e-29 132.9 110 62.7
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.5e-28 132.1 86 72.1
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.5e-28 132.1 112 60.7
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.9e-28 131.7 115 57.4
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.9e-28 131.7 109 62.4
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.9e-28 131.7 115 59.1
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 2.5e-28 131.3 111 62.2
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 2.5e-28 131.3 99 64.6
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 3.3e-28 131.0 114 59.6
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 4.3e-28 130.6 110 58.2
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 4.3e-28 130.6 95 66.3
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 5.6e-28 130.2 92 66.3
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 5.6e-28 130.2 107 60.7
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 7.3e-28 129.8 121 58.7
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 7.3e-28 129.8 110 60.0
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.6e-27 128.6 108 62.0
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 2.1e-27 128.3 111 62.2
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.8e-27 127.9 103 62.1
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 3.6e-27 127.5 103 65.0
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 4.8e-27 127.1 90 65.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 4.8e-27 127.1 110 60.9
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 4.8e-27 127.1 109 62.4
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 4.8e-27 127.1 110 57.3
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 6.2e-27 126.7 103 63.1
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.2e-27 126.7 93 63.4
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 8.1e-27 126.3 86 72.1
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.1e-26 125.9 107 59.8
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.1e-26 125.9 107 63.6
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.4e-26 125.6 114 59.6
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.8e-26 125.2 88 68.2
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.1e-26 124.4 117 56.4
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 4.0e-26 124.0 103 57.3
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 6.9e-26 123.2 114 57.9
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 9.0e-26 122.9 101 60.4
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.2e-25 122.5 91 62.6
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 1.5e-25 122.1 77 68.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 2.0e-25 121.7 91 63.7
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 2.0e-25 121.7 107 57.0
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.6e-25 121.3 73 74.0
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.6e-25 121.3 90 63.3
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 3.4e-25 120.9 87 64.4
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 9.9e-25 119.4 80 67.5
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.3e-24 119.0 105 57.1
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.3e-24 119.0 89 67.4
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.3e-24 119.0 89 67.4
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-23 115.2 111 55.0
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 4.2e-23 114.0 100 60.0
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 3.9e-21 107.5 109 52.3
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 4.8e-19 100.5 72 66.7
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 4.8e-19 100.5 58 77.6
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.5e-17 95.5 59 71.2
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 1.0e-16 92.8 105 44.8
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 6.5e-16 90.1 106 41.5
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 3.5e-14 84.3 42 92.9
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 4.6e-14 84.0 98 43.9
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 5.1e-13 80.5 74 40.5
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.1e-12 79.3 41 87.8
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.1e-12 79.3 42 85.7
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.9e-12 78.6 80 53.8
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.7e-12 77.0 62 59.7
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-11 75.9 80 51.2
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.8e-11 73.9 38 86.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 6.2e-11 73.6 37 91.9
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.4e-10 72.4 36 91.7
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.4e-10 72.4 38 86.8
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 6.9e-10 70.1 34 94.1
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 9.0e-10 69.7 36 86.1
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.5e-09 68.9 37 86.5
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 2.0e-09 68.6 34 91.2
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.9e-08 64.7 32 90.6
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 3.8e-08 64.3 39 71.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 5.0e-08 63.9 65 47.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 6.5e-08 63.5 36 80.6
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 4.2e-07 60.8 32 84.4


User provided reference genes

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