Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 3.6e-196 689.5 944 100.0
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 7.2e-144 515.8 348 80.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 4.0e-102 377.1 357 61.1
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.7e-98 364.4 355 62.5
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.5e-96 357.8 350 60.3
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.4e-94 352.1 350 59.7
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.2e-94 350.1 264 66.7
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-92 345.5 279 64.2
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 3.2e-91 340.9 352 60.8
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.2e-90 339.0 268 70.1
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 4.6e-90 337.0 386 55.7
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.7e-89 335.1 363 54.8
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 3.0e-89 334.3 348 54.6
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.5e-88 331.3 306 57.8
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 3.3e-88 330.9 353 56.7
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 9.5e-88 329.3 313 58.5
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 4.7e-87 327.0 348 54.6
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.0e-87 326.2 252 69.0
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 8.0e-87 326.2 252 69.0
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.4e-86 325.5 278 62.2
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.8e-86 325.1 300 62.0
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 9.8e-85 319.3 270 63.3
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.7e-84 318.5 297 57.6
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 1.7e-84 318.5 315 60.0
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.2e-84 318.2 239 66.5
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.2e-84 318.2 359 54.9
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.9e-84 317.8 358 54.2
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 3.7e-84 317.4 339 56.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 8.3e-84 316.2 352 56.0
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 1.9e-83 315.1 298 61.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.9e-83 315.1 245 69.4
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.9e-83 315.1 269 61.3
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.9e-83 315.1 303 59.4
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.4e-83 314.7 249 64.3
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.4e-83 313.5 348 54.9
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 7.0e-83 313.2 239 68.2
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.0e-82 311.6 359 55.2
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 3.5e-82 310.8 302 53.6
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 4.6e-82 310.5 246 67.1
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 6.0e-82 310.1 310 59.0
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 6.0e-82 310.1 355 56.3
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 6.0e-82 310.1 243 61.3
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.7e-81 308.5 328 54.6
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.3e-81 308.1 311 57.9
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.3e-81 308.1 296 60.5
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 3.9e-81 307.4 315 57.1
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 3.9e-81 307.4 292 61.0
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.5e-80 305.4 262 63.0
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.9e-80 305.1 319 56.7
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.9e-80 305.1 315 56.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 3.3e-80 304.3 301 59.5
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 4.3e-80 303.9 322 59.3
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 7.3e-80 303.1 302 57.3
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 9.5e-80 302.8 191 72.8
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.2e-79 302.4 358 50.6
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.8e-79 301.2 304 58.2
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 2.8e-79 301.2 352 48.9
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 2.8e-79 301.2 348 54.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 4.7e-79 300.4 350 56.0
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.1e-79 299.7 318 58.8
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 8.1e-79 299.7 349 50.7
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 1.1e-78 299.3 328 57.0
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.5e-77 295.4 351 53.6
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.5e-77 295.4 351 53.6
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.7e-76 292.0 341 50.1
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.7e-76 292.0 289 60.6
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 2.9e-76 291.2 304 53.3
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.7e-76 290.8 313 57.2
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.1e-75 289.3 304 52.6
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.4e-75 288.1 280 57.1
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 4.6e-74 283.9 352 51.1
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 4.6e-74 283.9 341 51.6
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 1.7e-73 282.0 355 51.8
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 7.3e-72 276.6 258 57.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 9.5e-72 276.2 326 47.5
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 8.1e-71 273.1 312 51.9
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.1e-70 272.7 272 59.2
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.8e-70 271.9 301 53.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 3.1e-70 271.2 360 50.3
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.5e-69 268.9 300 52.3
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 2.0e-69 268.5 302 52.6
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.0e-69 268.5 272 54.8
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 3.4e-69 267.7 302 50.3
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 9.9e-69 266.2 207 62.3
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.3e-68 265.8 277 53.1
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.7e-68 265.4 359 46.5
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.7e-68 265.4 358 46.6
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.1e-67 262.7 302 52.0
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 3.2e-67 261.2 195 64.1
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 6.0e-66 256.9 306 51.0
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 7.3e-64 250.0 188 66.5
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 6.2e-63 246.9 144 80.6
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 4.0e-62 244.2 362 48.1
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 5.2e-62 243.8 242 54.1
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 6.9e-62 243.4 289 48.1
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 2.6e-61 241.5 143 80.4
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 7.6e-61 240.0 192 70.3
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 2.7e-58 231.5 151 72.2
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 5.1e-57 227.3 231 55.8
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.1e-54 219.5 165 61.8
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 2.9e-52 211.5 112 94.6
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 3.3e-48 198.0 198 48.0
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 3.3e-48 198.0 127 74.0
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.1e-43 183.0 127 69.3
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 6.0e-42 177.2 183 44.3
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 2.0e-37 162.2 192 41.1
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 3.4e-37 161.4 86 86.0
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 4.2e-35 154.5 206 45.1
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 9.3e-35 153.3 182 42.9
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.5e-34 151.4 182 42.9
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.5e-32 145.2 113 63.7
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.8e-31 141.0 109 64.2
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 9.0e-30 136.7 105 64.8
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.2e-29 136.3 109 61.5
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.2e-29 136.3 186 36.6
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.0e-29 135.6 79 78.5
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 5.9e-29 134.0 111 61.3
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.0e-28 133.3 191 39.3
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.8e-28 131.3 111 60.4
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 5.0e-28 131.0 119 59.7
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 8.5e-28 130.2 110 60.0
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 8.5e-28 130.2 104 59.6
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.4e-27 129.4 112 56.2
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.5e-27 127.5 102 61.8
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.2e-26 126.3 81 72.8
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 3.9e-25 121.3 90 62.2
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 7.4e-24 117.1 81 66.7
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.7e-23 114.8 113 52.2
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.2e-18 99.8 72 65.3
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 2.3e-17 95.5 223 38.1
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.0e-12 80.1 43 83.7
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.3e-12 79.7 80 51.2
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.0e-12 77.8 62 59.7
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-11 75.9 82 48.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 2.1e-10 72.4 145 29.7
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.1e-10 70.9 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 1.1e-08 66.6 43 72.1
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 1.1e-08 66.6 43 72.1
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 4.8e-07 61.2 147 31.3
Ah.07g200540 Amaranthus hybridus HOM05D000142 ORTHO05D003173 1.1e-06 60.1 162 27.8
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 1.1e-06 60.1 151 29.8
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.4e-06 59.7 124 33.9
Gohir.D04G092400 Gossypium hirsutum HOM05D000142 ORTHO05D007638 2.4e-06 58.9 90 36.7
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 2.4e-06 58.9 135 31.9
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 3.1e-06 58.5 108 32.4
Gohir.A04G055200 Gossypium hirsutum HOM05D000142 ORTHO05D007638 3.1e-06 58.5 83 37.3
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 3.1e-06 58.5 135 31.9
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 4.1e-06 58.2 133 33.8
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 7.0e-06 57.4 151 29.1
Manes.09G044400 Manihot esculenta HOM05D000142 ORTHO05D007638 7.0e-06 57.4 99 34.3
unitig_62.g23292 Utricularia gibba HOM05D000285 ORTHO05D000241 7.0e-06 57.4 91 36.3
Duzib093G2001 Durio zibethinus HOM05D000142 ORTHO05D007638 9.1e-06 57.0 90 35.6
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 9.1e-06 57.0 135 31.1
Peaxi162Scf00582g00611 Petunia axillaris HOM05D000142 ORTHO05D007638 9.1e-06 57.0 99 32.3


User provided reference genes

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