Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 2224.1 1179 100.0
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1941.4 1188 88.0
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1905.2 1194 85.3
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1802.7 1160 84.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1693.3 1199 76.9
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1688.3 1200 75.4
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1664.4 1130 78.9
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1652.9 1200 75.2
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1651.7 1200 75.2
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1647.5 1207 75.2
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1644.8 1140 78.6
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1643.2 1202 74.1
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1635.2 1193 74.9
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1635.2 1212 73.3
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1630.2 1200 74.8
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1628.2 1197 74.9
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1627.5 1206 74.0
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1202 74.3
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1175 74.6
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1624.8 1196 74.9
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1622.4 1214 72.8
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1622.4 1169 75.6
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1620.1 1196 74.7
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1614.4 1187 73.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1612.0 1205 73.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1611.3 1222 73.6
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1609.0 1210 72.7
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1607.0 1196 71.7
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1605.1 1198 73.9
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1603.2 1206 72.6
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1601.6 1192 73.4
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1598.9 1204 72.1
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1598.6 1203 72.3
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1596.6 1200 72.8
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1596.3 1199 73.3
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1594.3 1193 73.0
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1593.6 1181 73.4
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1593.6 1205 72.4
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1592.4 1197 73.3
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1590.9 1208 73.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1590.1 1200 71.4
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1588.5 1263 69.9
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1577.0 1201 72.0
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1575.5 1214 71.8
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1573.1 1204 72.5
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1572.8 1192 71.9
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1571.2 1202 72.2
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1569.7 1222 71.6
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1569.3 1226 71.9
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1566.2 1206 72.3
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1563.5 1209 70.6
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1562.7 1251 70.0
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1562.4 1198 73.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1560.4 1197 71.8
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1559.3 1225 70.5
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1557.3 1201 71.4
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1557.0 1162 72.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1550.8 1219 70.1
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1549.6 1208 71.4
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1548.1 1180 71.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1544.6 1197 71.2
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1537.7 1187 71.9
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1537.7 1203 69.7
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1529.2 1204 70.3
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1529.2 1166 72.7
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1525.0 1171 71.3
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1520.4 1221 69.3
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1519.6 1193 69.3
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1507.3 1302 65.1
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1501.9 1202 69.4
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1499.2 1125 73.6
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1498.8 1185 69.8
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1498.8 1201 68.2
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1493.8 1200 69.4
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1492.2 1202 68.0
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1492.2 1202 68.0
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1484.2 1179 69.8
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1474.5 1200 68.6
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1474.5 1201 67.2
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1471.4 1202 68.0
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1471.4 1392 62.1
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1470.7 1204 68.2
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1469.9 1224 68.5
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1467.6 1207 68.1
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1466.1 1203 70.1
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1465.3 1213 67.8
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1464.5 1209 67.6
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1463.0 1205 67.7
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1459.5 1066 75.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1446.0 1188 66.8
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1441.4 1227 65.4
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1427.2 1196 67.4
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1422.1 1181 66.5
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1410.2 1202 67.5
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1396.7 1183 65.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1386.7 1178 66.9
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1363.6 1223 63.0
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1332.0 1223 61.4
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1324.3 875 77.4
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1314.7 872 78.7
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1302.0 930 74.7
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1298.1 1204 61.5
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1294.6 1261 60.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1171.8 842 74.2
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1154.8 790 77.8
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1139.8 1226 53.3
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1083.9 760 75.8
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1076.6 891 70.4
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 2.0e-308 1062.8 783 70.9
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.1e-282 977.2 670 76.9
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.7e-272 943.3 934 61.5
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 3.1e-269 932.6 964 58.2
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.0e-268 929.9 806 65.1
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-203 714.5 610 63.4
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 6.1e-185 652.5 473 76.5
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.3e-184 650.6 530 64.2
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 8.3e-174 615.5 954 40.0
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.6e-153 547.0 325 88.0
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 7.8e-148 529.3 377 74.3
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 6.4e-142 509.6 443 65.5
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 9.6e-138 495.7 371 76.8
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 4.8e-129 466.8 1166 31.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 2.2e-118 431.4 237 87.8
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.1e-117 429.1 816 39.0
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.7e-115 419.5 367 67.8
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 4.6e-100 370.5 313 64.9
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 1.1e-98 365.9 550 44.7
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 6.5e-94 350.1 1254 27.6
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 2.1e-92 345.1 334 64.4
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-86 325.9 206 75.7
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-86 325.9 206 75.7
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.9e-86 324.7 212 74.5
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 5.5e-85 320.5 174 90.8
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.8e-75 286.6 210 70.5
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 2.0e-74 285.4 224 64.3
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.4e-74 284.3 210 70.0
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 6.1e-68 263.8 361 50.7
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 3.7e-65 254.6 313 49.2
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.4e-64 252.7 384 45.8
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 1.6e-63 249.2 387 47.0
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 3.0e-59 235.0 170 74.1
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.2e-57 228.8 337 48.1
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.8e-56 225.7 196 71.9
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-52 213.0 164 67.7
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 2.6e-50 205.3 315 41.9
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.8e-50 203.4 154 69.5
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.7e-46 192.6 138 68.8
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.1e-40 171.4 96 87.5
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 6.0e-39 167.5 164 60.4
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.3e-38 166.4 236 47.5
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 2.8e-36 158.7 95 82.1
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.2e-33 149.1 125 64.8
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 6.4e-33 147.5 120 59.2
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 7.1e-32 144.1 77 89.6
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.1e-31 142.5 85 81.2
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 1.1e-29 136.7 122 61.5
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.5e-29 136.3 101 76.2
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 9.9e-26 123.6 216 42.1
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.9e-24 119.4 113 63.7
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 5.4e-24 117.9 119 64.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 2.1e-23 115.9 65 89.2
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 3.5e-23 115.2 87 63.2
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.3e-21 108.6 75 68.0
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 2.4e-19 102.4 96 65.6
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 3.8e-17 95.1 72 68.1
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 4.9e-17 94.7 101 64.4
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.4e-16 93.2 68 66.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 1.9e-16 92.8 60 73.3
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 7.1e-16 90.9 56 75.0
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-15 88.6 51 80.4
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 4.3e-13 81.6 58 74.1
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 4.3e-13 81.6 55 67.3
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 4.0e-11 75.1 116 42.2
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 4.5e-10 71.6 46 80.4
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 6.4e-09 67.8 113 41.6
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 3.2e-08 65.5 158 36.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 4.6e-07 61.6 42 64.3
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 3.9e-06 58.5 47 48.9


User provided reference genes

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