Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0138681 Helianthus annuus HOM05D002168 ORTHO05D002277 4.3e-39 164.1 77 100.0
ECA246G5031 Erigeron canadensis HOM05D000575 ORTHO05D002277 7.9e-09 63.5 38 78.9
HanXRQChr17g0548341 Helianthus annuus HOM05D002168 ORTHO05D002277 7.9e-09 63.5 38 78.9
Lsat_1_v5_gn_0_19560 Lactuca sativa HOM05D002168 ORTHO05D002277 7.9e-09 63.5 38 78.9
Potri.001G347900 Populus trichocarpa HOM05D002168 ORTHO05D002277 7.9e-09 63.5 38 78.9
SHI24542 Sapria himalayana HOM05D002168 ORTHO05D002277 7.9e-09 63.5 38 78.9
HPP92_011646 Vanilla planifolia HOM05D002168 ORTHO05D002277 1.0e-08 63.2 40 75.0
CAN.G206.5 Capsicum annuum HOM05D002168 ORTHO05D002277 1.8e-08 62.4 38 76.3
Nitab4.5_0002739g0020 Nicotiana tabacum HOM05D002168 ORTHO05D002277 1.8e-08 62.4 38 76.3
Nitab4.5_0011492g0010 Nicotiana tabacum HOM05D002168 ORTHO05D002277 1.8e-08 62.4 38 76.3
Actinidia35760 Actinidia chinensis HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
AL6G25340 Arabidopsis lyrata HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
BcaB01g05104 Brassica carinata HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
A03p06680 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
C03p07710 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
C09p62520 Brassica napus HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
BolC3t13271H Brassica oleracea HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
BolC9t59092H Brassica oleracea HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
BraA03t10002Z Brassica rapa HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
BraA10t44468Z Brassica rapa HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
Carub.0006s1275 Capsella rubella HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 73.7
Hma1.2p1_0858F.1_g229210 Hydrangea macrophylla HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
Lj7C738T14 Lonicera japonica HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
Oeu054614.1 Olea europaea HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
PGR083G0169 Punica granatum HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
Rhsim08G0052300 Rhododendron simsii HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
Sabra16G0227400 Salix brachista HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
vmacro18267 Vaccinium macrocarpon HOM05D002168 ORTHO05D002277 2.3e-08 62.0 38 76.3
AT5G14580 Arabidopsis thaliana HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 73.7
MSTRG.24029 Avicennia marina HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Cc07_g01920 Coffea canephora HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Dinv33468 Davidia involucrata HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 73.7
Duzib147G1710 Durio zibethinus HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Gohir.D09G027600 Gossypium hirsutum HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Gorai.006G032100 Gossypium raimondii HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Solyc02g086600.3 Solanum lycopersicum HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Sopen02g031360 Solanum pennellii HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
PGSC0003DMG400000516 Solanum tuberosum HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Thecc.04G014200 Theobroma cacao HOM05D002168 ORTHO05D002277 3.0e-08 61.6 38 76.3
Zm00001eb247190 Zea mays HOM05D002168 ORTHO05D002277 3.0e-08 61.6 40 70.0
Atru.chr6.2348 Acer truncatum HOM05D002168 ORTHO05D002277 3.9e-08 61.2 38 73.7
CSS0007819 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 3.9e-08 61.2 38 73.7
CSS0018850 Camellia sinensis var. sinensis HOM05D002168 ORTHO05D002277 3.9e-08 61.2 38 73.7
Peaxi162Scf00129g01334 Petunia axillaris HOM05D002168 ORTHO05D002277 3.9e-08 61.2 38 73.7
Prupe.3G288400 Prunus persica HOM05D002168 ORTHO05D002277 3.9e-08 61.2 38 73.7
QL02p075394 Quercus lobata HOM05D002168 ORTHO05D002277 3.9e-08 61.2 38 73.7
Ah.09g232220 Amaranthus hybridus HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.P30KPE Arachis hypogaea HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.SUJ4K6 Arachis hypogaea HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
CANSAT64G2333 Cannabis sativa HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
CiPaw.03G041400 Carya illinoinensis HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
COL.COLO4_29057 Corchorus olitorius HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
CsaV3_3G042650 Cucumis sativus L. HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
Lalb_Chr06g0175871 Lupinus albus HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
SGA_v2.0_scaffold135G34895 Striga asiatica HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 71.1
GSVIVG01032436001 Vitis vinifera HOM05D002168 ORTHO05D002277 5.1e-08 60.8 38 73.7
Cfa007400 Carpinus fangiana HOM05D002168 ORTHO05D002277 6.7e-08 60.5 38 73.7
Haze_14705 Corylus avellana HOM05D002168 ORTHO05D002277 6.7e-08 60.5 38 73.7
DCAR_021710 Daucus carota HOM05D002168 ORTHO05D002277 6.7e-08 60.5 38 73.7
Thhalv10012572m.g Eutrema salsugineum HOM05D002168 ORTHO05D002277 6.7e-08 60.5 38 71.1
RcHm_v2.0_Chr2g0172601 Rosa chinensis HOM05D002168 ORTHO05D002277 6.7e-08 60.5 38 73.7
Sp6g29450 Schrenkiella parvula HOM05D002168 ORTHO05D002277 6.7e-08 60.5 38 71.1
Aa31LG11G15340 Aethionema arabicum HOM05D001485 ORTHO05D002277 8.8e-08 60.1 38 71.1
Aqoxy3G02862 Aquilegia oxysepala HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 71.1
EL10Ac8g19521 Beta vulgaris HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 73.7
Cpa.g.sc108.35 Carica papaya HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 73.7
AUR62041598 Chenopodium quinoa HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 73.7
Migut.H00092 Erythranthe guttata HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 71.1
SalBow1G8403 Salvia bowleyana HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 73.7
Sc16g0003290 Simmondsia chinensis HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 71.1
TWI12G0035 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 73.7
TWI56G0079 Tripterygium wilfordii HOM05D002168 ORTHO05D002277 8.8e-08 60.1 38 73.7
A10p24050 Brassica napus HOM05D002168 ORTHO05D002277 1.1e-07 59.7 35 77.1
ClCG10G014020 Citrullus lanatus HOM05D002168 ORTHO05D002277 1.1e-07 59.7 38 71.1
FAN02G2577 Fragaria x ananassa HOM05D002168 ORTHO05D002277 1.1e-07 59.7 38 71.1
MD17G1031200 Malus domestica HOM05D002168 ORTHO05D002277 1.1e-07 59.7 38 71.1
TPR.G8718 Trifolium pratense HOM05D002168 ORTHO05D002277 1.1e-07 59.7 38 71.1
MELO3C009975.2 Cucumis melo HOM05D002168 ORTHO05D002277 1.5e-07 59.3 38 71.1
Psat1g190960 Pisum sativum HOM05D002168 ORTHO05D002277 1.5e-07 59.3 38 71.1
unitig_52.g17662 Utricularia gibba HOM05D002168 ORTHO05D002277 1.5e-07 59.3 38 68.4
CARHR198740 Cardamine hirsuta HOM05D002168 ORTHO05D002277 2.0e-07 58.9 38 68.4
Ciclev10014159m.g Citrus clementina HOM05D002168 ORTHO05D002277 2.0e-07 58.9 38 73.7
Ca_04173_v3 Cicer arietinum L. HOM05D002168 ORTHO05D002277 2.6e-07 58.5 38 71.1
Gohir.A09G028200 Gossypium hirsutum HOM05D002168 ORTHO05D002277 2.6e-07 58.5 38 73.7
MBI16_g05474_MAGBIO Magnolia biondii HOM05D002168 ORTHO05D002277 2.6e-07 58.5 38 71.1
Medtr6g005460 Medicago truncatula HOM05D002168 ORTHO05D002277 2.6e-07 58.5 38 71.1
Eucgr.J02224 Eucalyptus grandis HOM05D002168 ORTHO05D002277 4.4e-07 57.8 38 73.7
Phvul.004G011100 Phaseolus vulgaris HOM05D002168 ORTHO05D002277 4.4e-07 57.8 38 68.4
FvH4_6g51050 Fragaria vesca HOM05D002168 ORTHO05D002277 5.7e-07 57.4 38 68.4
FAN09G4671 Fragaria x ananassa HOM05D002168 ORTHO05D002277 5.7e-07 57.4 38 68.4
FAN14G2665 Fragaria x ananassa HOM05D002168 ORTHO05D002277 5.7e-07 57.4 38 68.4
VMungo0464G1155 Vigna mungo HOM05D002168 ORTHO05D002277 5.7e-07 57.4 38 68.4
PSO063G7027 Papaver somniferum HOM05D002168 ORTHO05D002277 7.4e-07 57.0 38 68.4
PSO832G0633 Papaver somniferum HOM05D002168 ORTHO05D002277 7.4e-07 57.0 38 68.4
Glyma.19G005800 Glycine max HOM05D002168 ORTHO05D002277 9.7e-07 56.6 38 65.8
Lj2g0027560 Lotus japonicus HOM05D002168 ORTHO05D002277 9.7e-07 56.6 38 71.1
Nn4g22702 Nelumbo nucifera HOM05D002168 ORTHO05D002277 9.7e-07 56.6 38 68.4
TAR629G1390 Trochodendron aralioides HOM05D002168 ORTHO05D002277 9.7e-07 56.6 38 68.4
Pp3c1_22150 Physcomitrium patens HOM05D002168 ORTHO05D002277 1.3e-06 56.2 48 52.1
Pp3c2_19900 Physcomitrium patens HOM05D002168 ORTHO05D002277 1.7e-06 55.8 38 60.5
ATR0078G007 Amborella trichopoda HOM05D002168 ORTHO05D002277 2.8e-06 55.1 38 65.8
SMO351G0216 Selaginella moellendorffii HOM05D002168 ORTHO05D002277 3.7e-06 54.7 38 63.2
CDE05G1018 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 4.8e-06 54.3 38 65.8
CDE05G1403 Ceratophyllum demersum HOM05D002168 ORTHO05D002277 4.8e-06 54.3 38 65.8


User provided reference genes

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