Gene: AT5G14580

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G14580
  • Transcript Identifier AT5G14580.1
  • Gene Type Coding gene
  • Location Chr5 : 4697612-4703013 : negative

Gene Family Information

  • ID HOM05D002168
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G14580.1
  • uniprot Q9S7G6

Descriptions

  • Description polyribonucleotide nucleotidyltransferase
  • Computational description polyribonucleotide nucleotidyltransferase, putative; FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: mRNA catabolic process, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT3G03710.1); Has 30004 Blast hits to 26962 proteins in 2901 species: Archae - 317; Bacteria - 19794; Metazoa - 489; Fungi - 141; Plants - 452; Viruses - 0; Other Eukaryotes - 8811 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006402
IEA
GOA DatabasemRNA catabolic process
GO:0006402
IEA
InterPromRNA catabolic process
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0000965
IBA
Gene Ontologymitochondrial RNA 3'-end processing1
GO:0006401
IBA
Gene OntologyRNA catabolic process1
GO:0000958
IBA
Gene Ontologymitochondrial mRNA catabolic process1
GO:0000963
IMP
Gene Ontologymitochondrial RNA processing2
GO:0000957
IMP
Gene Ontologymitochondrial RNA catabolic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004654
IEA
GOA Databasepolyribonucleotide nucleotidyltransferase activity
GO:0004654
IMP
IBA
Gene Ontologypolyribonucleotide nucleotidyltransferase activity1 2
GO:0004654
IEA
InterPropolyribonucleotide nucleotidyltransferase activity
GO:0000175
IMP
IBA
Gene Ontology3'-5'-exoribonuclease activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IBA
Gene Ontologymitochondrion1
GO:0005829
IBA
Gene Ontologycytosol1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain
IPR036612 K Homology domain, type 1 superfamily
IPR027408 PNPase/RNase PH domain superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR003029 S1 domain
IPR012340 Nucleic acid-binding, OB-fold
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR012162 Polyribonucleotide nucleotidyltransferase
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR022967 RNA-binding domain, S1
Mapman id Description
16.11.1.1 RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP)