Gene: PGSC0003DMG400000516

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400000516
  • Transcript Identifier PGSC0003DMT400001389
  • Gene Type Coding gene
  • Location ST4.03ch02 : 47223660-47231950 : positive

Gene Family Information

  • ID HOM05D002168
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37426403
  • id PGSC0003DMG400000516.v4.03
  • uniprot M0ZID5

Descriptions

  • Description Polyribonucleotide nucleotidyltransferase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0000963
ISO
PLAZA Integrative Orthologymitochondrial RNA processing AT5G14580
GO:0000957
ISO
PLAZA Integrative Orthologymitochondrial RNA catabolic process AT5G14580
GO:0006401
IBA
GOA DatabaseRNA catabolic process
GO:0000958
IBA
GOA Databasemitochondrial mRNA catabolic process
GO:0000965
IBA
GOA Databasemitochondrial RNA 3'-end processing
GO:0006402
IEA
GOA DatabasemRNA catabolic process
GO:0006402
IEA
InterPromRNA catabolic process
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000175
IBA
GOA Database3'-5'-exoribonuclease activity
GO:0004654
IBA
IEA
GOA Databasepolyribonucleotide nucleotidyltransferase activity
GO:0004654
IEA
InterPropolyribonucleotide nucleotidyltransferase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IBA
GOA Databasemitochondrion
GO:0005829
IBA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR012340 Nucleic acid-binding, OB-fold
IPR003029 S1 domain
IPR022967 RNA-binding domain, S1
IPR036612 K Homology domain, type 1 superfamily
IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain
IPR012162 Polyribonucleotide nucleotidyltransferase
IPR027408 PNPase/RNase PH domain superfamily
IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily
IPR015847 Exoribonuclease, phosphorolytic domain 2
Mapman id Description
16.11.1.1 RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP)