Gene: Lalb_Chr06g0175871
General Information
Structural Information
- Species Lupinus albus
- Gene Identifier Lalb_Chr06g0175871
- Transcript Identifier Lalb_Chr06g0175871
- Gene Type Coding gene
- Location Lalb_Chr06 : 16993263-17002091 : negative
Gene Family Information
- ID HOM05D002168
- #Genes/#Species 309/100
- Phylogenetic origin
- ID ORTHO05D002277
- #Genes/#Species 301/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Lalb_Chr06g0175871.v1
- pacid 44558332
- uniprot A0A6A4QGC0
Descriptions
- Description PTHR11252//PTHR11252:SF3 - POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE // POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0006402 | IEA | GOA Database | mRNA catabolic process | |
| GO:0006402 | IEA | InterPro | mRNA catabolic process | |
| GO:0000957 | ISO | PLAZA Integrative Orthology | mitochondrial RNA catabolic process | AT5G14580 |
| GO:0000963 | ISO | PLAZA Integrative Orthology | mitochondrial RNA processing | AT5G14580 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004654 | IEA | GOA Database | polyribonucleotide nucleotidyltransferase activity | |
| GO:0004654 | IEA | InterPro | polyribonucleotide nucleotidyltransferase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0000175 | ISO | PLAZA Integrative Orthology | 3'-5'-exoribonuclease activity | AT5G14580 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036612 | K Homology domain, type 1 superfamily |
| IPR022967 | RNA-binding domain, S1 |
| IPR027408 | PNPase/RNase PH domain superfamily |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR015847 | Exoribonuclease, phosphorolytic domain 2 |
| IPR036345 | Exoribonuclease, PH domain 2 superfamily |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR012162 | Polyribonucleotide nucleotidyltransferase |
| IPR015848 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain |
| IPR001247 | Exoribonuclease, phosphorolytic domain 1 |
| IPR003029 | S1 domain |
| Mapman id | Description |
|---|---|
| 16.11.1.1 | RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP) |