Gene: Solyc02g086600.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g086600.3
  • Transcript Identifier Solyc02g086600.3.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 47269715-47277884 : negative

Gene Family Information

  • ID HOM05D002168
  • #Genes/#Species 309/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g086600.3.1
  • uniprot A0A3Q7FA89
  • gene_id Solyc02g086600

Descriptions

  • Description Polyribonucleotide nucleotidyltransferase (AHRD V3.3 *** A0A2U1PID0_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015995
ISO
PLAZA Integrative Orthologychlorophyll biosynthetic process AT3G03710
GO:0006468
IEA
GOA Databaseprotein phosphorylation
GO:0006401
IBA
GOA DatabaseRNA catabolic process
GO:0000958
IBA
GOA Databasemitochondrial mRNA catabolic process
GO:0000965
IBA
GOA Databasemitochondrial RNA 3'-end processing
GO:0006402
IEA
GOA DatabasemRNA catabolic process
GO:0006402
IEA
InterPromRNA catabolic process
GO:0000957
ISO
PLAZA Integrative Orthologymitochondrial RNA catabolic process AT5G14580
GO:0016120
ISO
PLAZA Integrative Orthologycarotene biosynthetic process AT3G03710
GO:0000963
ISO
PLAZA Integrative Orthologymitochondrial RNA processing AT5G14580
GO:0016123
ISO
PLAZA Integrative Orthologyxanthophyll biosynthetic process AT3G03710
GO:0016036
ISO
PLAZA Integrative Orthologycellular response to phosphate starvation AT3G03710
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing AT3G03710
GO:0010323
ISO
PLAZA Integrative Orthologynegative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway AT3G03710
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0016310
IEA
GOA Databasephosphorylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000175
IBA
GOA Database3'-5'-exoribonuclease activity
GO:0004654
IBA
IEA
GOA Databasepolyribonucleotide nucleotidyltransferase activity
GO:0004654
IEA
InterPropolyribonucleotide nucleotidyltransferase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G03710
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004674
IEA
GOA Databaseprotein serine/threonine kinase activity
GO:0016301
IEA
GOA Databasekinase activity
GO:0004672
IEA
GOA Databaseprotein kinase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IBA
GOA Databasemitochondrion
GO:0005829
IBA
GOA Databasecytosol
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G03710
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G03710
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036345 Exoribonuclease, PH domain 2 superfamily
IPR027408 PNPase/RNase PH domain superfamily
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR036612 K Homology domain, type 1 superfamily
IPR012162 Polyribonucleotide nucleotidyltransferase
IPR003029 S1 domain
IPR012340 Nucleic acid-binding, OB-fold
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily
IPR022967 RNA-binding domain, S1
IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain
Mapman id Description
16.11.1.1 RNA processing.organelle machinery.ribonuclease activities.polynucleotide phosphorylase (PNP)