Gene: ECA246G5031
General Information
Structural Information
- Species Erigeron canadensis
- Gene Identifier ECA246G5031
- Transcript Identifier ECA246G5031.1
- Gene Type Coding gene
- Location Conyza_canadensis_scaffold:8 : 36979198-36996039 : positive
Gene Family Information
- ID HOM05D000575
- #Genes/#Species 966/99
- Phylogenetic origin
- ID ORTHO05D002277
- #Genes/#Species 301/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name g39031
- Alias g39031.t1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019264 | IEA | InterPro | glycine biosynthetic process from serine | |
| GO:0035999 | IEA | InterPro | tetrahydrofolate interconversion | |
| GO:0006402 | IEA | InterPro | mRNA catabolic process | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0000957 | ISO | PLAZA Integrative Orthology | mitochondrial RNA catabolic process | AT5G14580 |
| GO:0000963 | ISO | PLAZA Integrative Orthology | mitochondrial RNA processing | AT5G14580 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004372 | IEA | InterPro | glycine hydroxymethyltransferase activity | |
| GO:0030170 | IEA | InterPro | pyridoxal phosphate binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0004654 | IEA | InterPro | polyribonucleotide nucleotidyltransferase activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0000175 | ISO | PLAZA Integrative Orthology | 3'-5'-exoribonuclease activity | AT5G14580 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT4G32520 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT4G32520 |
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT4G32520 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001085 | Serine hydroxymethyltransferase |
| IPR036345 | Exoribonuclease, PH domain 2 superfamily |
| IPR039429 | Serine hydroxymethyltransferase-like domain |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| IPR015424 | Pyridoxal phosphate-dependent transferase |
| IPR036612 | K Homology domain, type 1 superfamily |
| IPR012162 | Polyribonucleotide nucleotidyltransferase |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR027408 | PNPase/RNase PH domain superfamily |
| IPR022967 | RNA-binding domain, S1 |
| IPR015848 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain |
| IPR015847 | Exoribonuclease, phosphorolytic domain 2 |
| IPR036456 | Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily |
| IPR001247 | Exoribonuclease, phosphorolytic domain 1 |
| IPR003029 | S1 domain |
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain |