Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126461 Helianthus annuus HOM05D000399 ORTHO05D000304 3.8e-82 308.1 157 100.0
HanXRQChr05g0136441 Helianthus annuus HOM05D000399 ORTHO05D000304 2.9e-26 122.5 73 86.3
HanXRQChr13g0398971 Helianthus annuus HOM05D000399 ORTHO05D000304 4.4e-22 108.6 71 80.3
ECA236G2155 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.7e-21 105.5 71 80.3
Lsat_1_v5_gn_8_70500 Lactuca sativa HOM05D000399 ORTHO05D000304 2.4e-20 102.8 94 66.0
Lsat_1_v5_gn_8_70401 Lactuca sativa HOM05D000399 ORTHO05D000304 7.7e-19 97.8 94 62.8
ECA236G0176 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.5e-18 94.7 68 73.5
Cc08_g06780 Coffea canephora HOM05D000399 ORTHO05D000304 8.0e-16 87.8 71 64.8
arahy.Tifrunner.gnm1.ann1.79WVX3 Arachis hypogaea HOM05D000399 ORTHO05D000304 2.6e-14 82.8 71 63.4
arahy.Tifrunner.gnm1.ann1.ZWX69H Arachis hypogaea HOM05D000399 ORTHO05D000304 3.4e-14 82.4 71 63.4
Eucgr.C03173 Eucalyptus grandis HOM05D000399 ORTHO05D000304 4.4e-14 82.0 128 46.1
Actinidia16900 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.7e-14 81.6 94 54.3
CSS0037384 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 9.8e-14 80.9 71 63.4
Aqoxy7G04095 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.3e-13 80.5 128 46.9
Psat5g034960 Pisum sativum HOM05D000399 ORTHO05D000304 1.7e-13 80.1 71 60.6
GSVIVG01035494001 Vitis vinifera HOM05D000399 ORTHO05D000304 2.2e-13 79.7 71 60.6
CiPaw.14G040900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.8e-13 79.3 71 62.0
Dinv40935 Davidia involucrata HOM05D000399 ORTHO05D000304 2.8e-13 79.3 94 53.2
Hma1.2p1_0664F.1_g198950 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 2.8e-13 79.3 82 57.3
vmacro18656 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.8e-13 79.3 82 56.1
MD15G1047500 Malus domestica HOM05D000399 ORTHO05D000304 3.7e-13 79.0 71 63.4
PGR044G1905 Punica granatum HOM05D000399 ORTHO05D000304 3.7e-13 79.0 71 60.6
Lj7C209T3 Lonicera japonica HOM05D000399 ORTHO05D000304 4.9e-13 78.6 82 56.1
TAR624G0949 Trochodendron aralioides HOM05D000399 ORTHO05D000304 8.3e-13 77.8 128 43.8
Solyc08g067210.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.1e-12 77.4 70 55.7
Sopen08g021150 Solanum pennellii HOM05D000399 ORTHO05D000304 1.1e-12 77.4 70 55.7
Nitab4.5_0000508g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.4e-12 77.0 64 64.1
PSO135G0437 Papaver somniferum HOM05D000399 ORTHO05D000304 1.8e-12 76.6 75 54.7
ClCG08G009740 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.4e-12 76.3 71 57.7
MD08G1046300 Malus domestica HOM05D000399 ORTHO05D000304 2.4e-12 76.3 128 45.3
Medtr3g105390 Medicago truncatula HOM05D000399 ORTHO05D000304 2.4e-12 76.3 81 53.1
FvH4_2g30780 Fragaria vesca HOM05D000399 ORTHO05D000304 3.1e-12 75.9 59 64.4
FAN24G1462 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.1e-12 75.9 59 64.4
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.1e-12 75.9 71 60.6
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 4.1e-12 75.5 71 59.2
Ciclev10007239m.g Citrus clementina HOM05D000399 ORTHO05D000304 4.1e-12 75.5 71 57.7
Nitab4.5_0004346g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.1e-12 75.5 71 60.6
PSO724G0698 Papaver somniferum HOM05D000399 ORTHO05D000304 4.1e-12 75.5 75 53.3
Haze_03339 Corylus avellana HOM05D000399 ORTHO05D000304 5.4e-12 75.1 128 46.1
Ca_15808_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 7.0e-12 74.7 71 54.9
DCAR_004371 Daucus carota HOM05D000399 ORTHO05D000304 7.0e-12 74.7 71 54.9
Gorai.010G093100 Gossypium raimondii HOM05D000399 ORTHO05D000304 7.0e-12 74.7 128 43.8
Nn8g38601 Nelumbo nucifera HOM05D000399 ORTHO05D000304 7.0e-12 74.7 71 59.2
Peaxi162Scf00922g00316 Petunia axillaris HOM05D000399 ORTHO05D000304 7.0e-12 74.7 64 64.1
Sc06g0000120 Simmondsia chinensis HOM05D000399 ORTHO05D000304 7.0e-12 74.7 71 56.3
Ah.11g040220 Amaranthus hybridus HOM05D000399 ORTHO05D000304 9.2e-12 74.3 71 56.3
Gohir.D06G080000 Gossypium hirsutum HOM05D000399 ORTHO05D000304 9.2e-12 74.3 128 43.8
Lalb_Chr23g0268041 Lupinus albus HOM05D000399 ORTHO05D000304 9.2e-12 74.3 128 40.6
AUR62013883 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.2e-11 73.9 71 59.2
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.2e-11 73.9 71 59.2
CsaV3_6G031860 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.2e-11 73.9 71 54.9
Gohir.A06G080450 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-11 73.9 128 43.8
Prupe.1G401900 Prunus persica HOM05D000399 ORTHO05D000304 1.2e-11 73.9 71 59.2
MELO3C011495.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.6e-11 73.6 71 54.9
FAN20G1611 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.6e-11 73.6 114 47.4
FAN27G0604 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.6e-11 73.6 114 47.4
Sed0007965 Sechium edule HOM05D000399 ORTHO05D000304 1.6e-11 73.6 77 53.2
Glyma.04G057400 Glycine max HOM05D000399 ORTHO05D000304 2.7e-11 72.8 71 56.3
Carub.0005s0970 Capsella rubella HOM05D000399 ORTHO05D000304 3.5e-11 72.4 53 64.2
Os01g0909200 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.5e-11 72.4 128 40.6
Phvul.009G083800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.5e-11 72.4 66 57.6
Aqoxy2G01226 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 4.5e-11 72.0 128 43.0
CARHR049880 Cardamine hirsuta HOM05D000399 ORTHO05D000304 4.5e-11 72.0 53 64.2
Duzib150G0526 Durio zibethinus HOM05D000399 ORTHO05D000304 4.5e-11 72.0 128 43.8
Thhalv10010061m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 4.5e-11 72.0 53 64.2
TPR.G3571 Trifolium pratense HOM05D000399 ORTHO05D000304 4.5e-11 72.0 71 53.5
Carub.0005s0966 Capsella rubella HOM05D000399 ORTHO05D000304 5.9e-11 71.6 53 64.2
RcHm_v2.0_Chr6g0312121 Rosa chinensis HOM05D000399 ORTHO05D000304 5.9e-11 71.6 113 44.2
TWI63G1283 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 5.9e-11 71.6 113 42.5
VMungo1309G2494 Vigna mungo HOM05D000399 ORTHO05D000304 5.9e-11 71.6 71 56.3
FvH4_2g07790 Fragaria vesca HOM05D000399 ORTHO05D000304 7.8e-11 71.2 57 64.9
FAN24G2100 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.8e-11 71.2 57 64.9
AL5G21950 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.0e-10 70.9 53 62.3
AT3G43920 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.0e-10 70.9 53 62.3
Cfa010390 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.0e-10 70.9 128 44.5
Glyma.06G058000 Glycine max HOM05D000399 ORTHO05D000304 1.0e-10 70.9 71 54.9
Rhsim08G0003600 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.0e-10 70.9 60 61.7
SGA_v2.0_scaffold169G38611 Striga asiatica HOM05D000399 ORTHO05D000304 1.0e-10 70.9 94 44.7
BcaB02g10763 Brassica carinata HOM05D000399 ORTHO05D000304 1.3e-10 70.5 53 62.3
A06p26820 Brassica napus HOM05D000399 ORTHO05D000304 1.3e-10 70.5 53 62.3
BraA06t25613Z Brassica rapa HOM05D000399 ORTHO05D000304 1.3e-10 70.5 53 62.3
DCAR_001243 Daucus carota HOM05D000399 ORTHO05D000304 1.3e-10 70.5 71 52.1
Sp5g17310 Schrenkiella parvula HOM05D000399 ORTHO05D000304 1.3e-10 70.5 71 49.3
Thecc.09G065600 Theobroma cacao HOM05D000399 ORTHO05D000304 1.3e-10 70.5 53 69.8
FAN15G0842 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.7e-10 70.1 57 63.2
COL.COLO4_21161 Corchorus olitorius HOM05D000399 ORTHO05D000304 2.3e-10 69.7 131 42.7
Prupe.8G202000 Prunus persica HOM05D000399 ORTHO05D000304 2.3e-10 69.7 72 50.0
Aa31LG4G13570 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.9e-10 69.3 53 62.3
MBI16_g41119_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 3.8e-10 68.9 131 42.7
Manes.03G056500 Manihot esculenta HOM05D000399 ORTHO05D000304 3.8e-10 68.9 71 50.7
Potri.018G047500 Populus trichocarpa HOM05D000399 ORTHO05D000304 3.8e-10 68.9 53 66.0
Sabra06G0168700 Salix brachista HOM05D000399 ORTHO05D000304 3.8e-10 68.9 57 61.4
BcaC01g02230 Brassica carinata HOM05D000399 ORTHO05D000304 5.0e-10 68.6 71 46.5
C03p67620 Brassica napus HOM05D000399 ORTHO05D000304 5.0e-10 68.6 71 46.5
BolSC21t60260H Brassica oleracea HOM05D000399 ORTHO05D000304 5.0e-10 68.6 71 46.5
FAN15G0102 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.0e-10 68.6 113 45.1
Migut.E01470 Erythranthe guttata HOM05D000399 ORTHO05D000304 6.6e-10 68.2 71 47.9
FvH4_2g18930 Fragaria vesca HOM05D000399 ORTHO05D000304 6.6e-10 68.2 69 49.3
FAN15G1291 Fragaria x ananassa HOM05D000399 ORTHO05D000304 8.6e-10 67.8 69 49.3
QL09p054073 Quercus lobata HOM05D000399 ORTHO05D000304 8.6e-10 67.8 71 52.1
Lj1g0021094 Lotus japonicus HOM05D000399 ORTHO05D000304 1.5e-09 67.0 71 54.9
Oeu030209.1 Olea europaea HOM05D000399 ORTHO05D000304 1.5e-09 67.0 71 50.7
THA.LOC104815087 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.5e-09 67.0 53 58.5
unitig_37.g12915 Utricularia gibba HOM05D000399 ORTHO05D000304 1.5e-09 67.0 94 43.6
QL07p035348 Quercus lobata HOM05D000399 ORTHO05D000304 1.9e-09 66.6 68 57.4
HPP92_000547 Vanilla planifolia HOM05D000399 ORTHO05D000304 1.9e-09 66.6 85 50.6
Zm00001eb143950 Zea mays HOM05D000399 ORTHO05D000304 2.5e-09 66.2 74 51.4
RcHm_v2.0_Chr2g0086421 Rosa chinensis HOM05D000399 ORTHO05D000304 3.3e-09 65.9 72 45.8
RcHm_v2.0_Chr6g0284721 Rosa chinensis HOM05D000399 ORTHO05D000304 3.3e-09 65.9 99 40.4
Zm00001eb045380 Zea mays HOM05D000399 ORTHO05D000304 3.3e-09 65.9 53 60.4
SalBow8G2542 Salvia bowleyana HOM05D000399 ORTHO05D000304 4.3e-09 65.5 71 49.3
FAN24G1392 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.6e-09 65.1 69 47.8
Nn8g39754 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.6e-08 63.5 72 45.8
FvH4_1g01480 Fragaria vesca HOM05D000399 ORTHO05D000304 2.1e-08 63.2 72 45.8
FAN19G1338 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-08 63.2 72 45.8
FAN23G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-08 63.2 72 45.8
FAN28G2728 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.1e-08 63.2 72 45.8
CSS0007492 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.7e-08 62.0 72 41.7
Os10g0485600 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 6.1e-08 61.6 53 56.6
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 1.0e-07 60.8 91 40.7
CDE02G0393 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.4e-07 60.5 84 42.9
MD10G1163700 Malus domestica HOM05D000399 ORTHO05D000304 1.4e-07 60.5 72 47.2
Sabra06G0144400 Salix brachista HOM05D000399 ORTHO05D000304 2.3e-07 59.7 72 41.7
ATR0767G233 Amborella trichopoda HOM05D000399 ORTHO05D000304 3.0e-07 59.3 113 38.1
Gohir.D13G195300 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.0e-07 59.3 121 41.3
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.0e-07 59.3 72 43.1
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 3.0e-07 59.3 72 44.4
Gohir.D05G051600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.0e-07 58.9 72 43.1
vmacro21876 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 4.0e-07 58.9 72 40.3
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 5.2e-07 58.5 72 40.3
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 5.2e-07 58.5 72 40.3
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 5.2e-07 58.5 73 43.8
Rhsim01G0049100 Rhododendron simsii HOM05D000399 ORTHO05D000304 5.2e-07 58.5 72 41.7
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 5.2e-07 58.5 73 43.8
CDE04G3475 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 8.9e-07 57.8 54 53.7
SEGI_27678 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 8.9e-07 57.8 53 52.8
SEGI_28046 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 8.9e-07 57.8 53 52.8
AagrBONN_evm.TU.Sc2ySwM_117.732 Anthoceros agrestis HOM05D000399 ORTHO05D000304 1.2e-06 57.4 54 50.0
Lsat_1_v5_gn_5_90720 Lactuca sativa HOM05D000399 ORTHO05D000304 1.2e-06 57.4 78 41.0
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.5e-06 57.0 72 41.7
MD15G1157600 Malus domestica HOM05D000399 ORTHO05D000304 1.5e-06 57.0 72 47.2
Potri.006G188800 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.5e-06 57.0 72 41.7
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.5e-06 57.0 72 43.1
SMO061G0001 Selaginella moellendorffii HOM05D000399 ORTHO05D000304 2.0e-06 56.6 54 53.7
Duzib168G1954 Durio zibethinus HOM05D000399 ORTHO05D000304 2.6e-06 56.2 72 45.8
TAR626G0740 Trochodendron aralioides HOM05D007151 ORTHO05D009056 2.6e-06 56.2 72 43.1
AagrBONN_evm.TU.Sc2ySwM_344.1176 Anthoceros agrestis HOM05D000399 ORTHO05D000304 3.4e-06 55.8 54 50.0
EL10Ac8g18834 Beta vulgaris HOM05D000399 ORTHO05D000304 3.4e-06 55.8 71 40.8
EL10Ac8g18835 Beta vulgaris HOM05D000399 ORTHO05D000304 3.4e-06 55.8 71 40.8
TPR.G15773 Trifolium pratense HOM05D000399 ORTHO05D000304 3.4e-06 55.8 73 42.5
Cpa.g.sc67.83 Carica papaya HOM05D000399 ORTHO05D000304 4.4e-06 55.5 49 59.2
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 4.4e-06 55.5 72 40.3
Mapoly0003s0222 Marchantia polymorpha HOM05D000399 ORTHO05D000304 4.4e-06 55.5 54 50.0
EL10Ac8g18832 Beta vulgaris HOM05D000399 ORTHO05D000304 5.8e-06 55.1 71 40.8
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 5.8e-06 55.1 72 44.4
Mapoly0113s0032 Marchantia polymorpha HOM05D000399 ORTHO05D000304 5.8e-06 55.1 54 53.7
SalBow1G6743 Salvia bowleyana HOM05D000399 ORTHO05D000304 5.8e-06 55.1 72 36.1
TWI23G0545 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 5.8e-06 55.1 54 51.9
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 7.5e-06 54.7 73 42.5
AUR62042026 Chenopodium quinoa HOM05D000399 ORTHO05D008498 7.5e-06 54.7 72 37.5
Hund21616 Selenicereus undatus HOM05D000399 ORTHO05D000304 7.5e-06 54.7 71 39.4
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 9.8e-06 54.3 72 40.3
Gorai.013G221400 Gossypium raimondii HOM05D000399 ORTHO05D000304 9.8e-06 54.3 121 38.8
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 9.8e-06 54.3 72 43.1
Sed0002244 Sechium edule HOM05D000399 ORTHO05D000304 9.8e-06 54.3 71 36.6
SMO347G0443 Selaginella moellendorffii HOM05D000399 ORTHO05D000304 9.8e-06 54.3 116 36.2


User provided reference genes

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