Gene: Cc08_g06780

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc08_g06780
  • Transcript Identifier Cc08_g06780.1
  • Gene Type Coding gene
  • Location chr8 : 17408330-17423075 : negative

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB B9IKF4
  • UniProtKB B9RQZ1
  • UniProtKB Q5N870
  • UniProtKB Q9LXW7
  • UniProtKB F6KFZ0
  • UniProtKB Q7XD96
  • id GSCOCG00005816001

Descriptions

  • Description Endoribonuclease Dicer homolog 3a
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT3G43920
GO:0035279
ISO
PLAZA Integrative OrthologymRNA cleavage involved in gene silencing by miRNA AT1G01040
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT3G43920
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT3G43920
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G01040
GO:2000034
ISO
PLAZA Integrative Orthologyregulation of seed maturation AT1G01040
GO:0010599
ISO
PLAZA Integrative Orthologyproduction of lsiRNA involved in RNA interference AT1G01040
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G43920
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA Solyc08g067210.3
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT1G01040
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT1G01040
GO:0051214
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immunity against RNA virus AT3G43920
GO:0048317
ISO
PLAZA Integrative Orthologyseed morphogenesis AT1G01040
GO:0000911
ISO
PLAZA Integrative Orthologycytokinesis by cell plate formation AT1G01040
GO:0009880
ISO
PLAZA Integrative Orthologyembryonic pattern specification AT1G01040
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT3G43920
GO:0007275
ISO
PLAZA Integrative Orthologymulticellular organism development Os03g0121800
GO:0031053
ISO
PLAZA Integrative Orthologyprimary miRNA processing AT1G01040
GO:0010098
ISO
PLAZA Integrative Orthologysuspensor development AT1G01040
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding AT3G43920
GO:0004525
IEA
InterProribonuclease III activity
GO:0016787
IEA
InterProhydrolase activity
GO:0005524
IEA
InterProATP binding
GO:0003677
IEA
InterProDNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G43920
GO:0010445
ISO
PLAZA Integrative Orthologynuclear dicing body AT1G01040
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G43920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000999 Ribonuclease III domain
IPR003100 PAZ domain
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036085 PAZ domain superfamily
IPR038248 Dicer dimerisation domain superfamily
IPR006935 Helicase/UvrB, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
Mapman id Description
12.5.1.8 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.endoribonuclease (DCL3)