Gene: Solyc08g067210.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc08g067210.3
- Transcript Identifier Solyc08g067210.3.1
- Gene Type Coding gene
- Location SL4.0ch08 : 54328277-54356280 : positive
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc08g067210.3.1
- uniprot A0A3Q7HRB3
- gene_id Solyc08g067210
Descriptions
- Description Dicer-like 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT3G43920 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT3G43920 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT3G43920 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT3G43920 |
| GO:0051214 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immunity against RNA virus | AT3G43920 |
| GO:0030422 | IBA | GOA Database | production of siRNA involved in RNA interference | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0031047 | IDA | Gene Ontology | gene silencing by RNA | 1 |
| GO:0090502 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, endonucleolytic | |
| GO:0090501 | IEA | GOA Database | RNA phosphodiester bond hydrolysis | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004525 | IBA IEA | GOA Database | ribonuclease III activity | |
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT3G43920 |
| GO:0003723 | IBA IEA | GOA Database | RNA binding | |
| GO:0016891 | IEA | GOA Database | endoribonuclease activity, producing 5'-phosphomonoesters | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0004519 | IEA | GOA Database | endonuclease activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G43920 |
| GO:0005634 | IBA | GOA Database | nucleus | |
| GO:0005737 | IBA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR000999 | Ribonuclease III domain |
| IPR003100 | PAZ domain |
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR036085 | PAZ domain superfamily |
| IPR038248 | Dicer dimerisation domain superfamily |
| Mapman id | Description |
|---|---|
| 12.5.1.8 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.endoribonuclease (DCL3) |