Gene: SGA_v2.0_scaffold169G38611
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold169G38611
- Transcript Identifier SGA_v2.0_scaffold169T38611
- Gene Type Coding gene
- Location scaffold169 : 116197-128786 : negative
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- product dicer-like 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0051214 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immunity against RNA virus | AT3G43920 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT3G43920 |
| GO:0031047 | ISO | PLAZA Integrative Orthology | gene silencing by RNA | Solyc08g067210.3 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT3G43920 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT3G43920 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT3G43920 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT3G43920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016787 | IEA | InterPro | hydrolase activity | |
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT3G43920 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G43920 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G43920 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001650 | Helicase, C-terminal |
| IPR000999 | Ribonuclease III domain |
| IPR003100 | PAZ domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR036085 | PAZ domain superfamily |
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR006935 | Helicase/UvrB, N-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR038248 | Dicer dimerisation domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |