Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0037311 Helianthus annuus HOM05D002182 ORTHO05D004671 1.5e-101 372.9 183 100.0
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 1.6e-15 87.0 161 37.3
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 2.1e-15 86.7 161 37.3
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.1e-15 86.7 169 36.7
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.7e-15 86.3 161 38.5
C02p63010 Brassica napus HOM05D002182 ORTHO05D004671 2.7e-15 86.3 161 38.5
BolC2t12375H Brassica oleracea HOM05D002182 ORTHO05D004671 2.7e-15 86.3 161 38.5
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 2.7e-15 86.3 161 37.3
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 2.7e-15 86.3 161 36.6
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 3.5e-15 85.9 161 37.3
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 3.5e-15 85.9 168 36.9
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 4.6e-15 85.5 144 37.5
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 4.6e-15 85.5 161 37.3
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 6.0e-15 85.1 161 37.9
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 6.0e-15 85.1 161 37.9
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 7.9e-15 84.7 165 35.8
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 7.9e-15 84.7 161 37.3
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 1.0e-14 84.3 140 37.9
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 1.0e-14 84.3 168 35.1
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 1.3e-14 84.0 176 36.4
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 1.3e-14 84.0 168 32.1
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 1.3e-14 84.0 165 35.8
HPP92_005922 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.8e-14 83.6 143 39.2
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 2.3e-14 83.2 168 33.9
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 3.0e-14 82.8 144 37.5
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 3.9e-14 82.4 146 37.0
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 3.9e-14 82.4 161 38.5
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 3.9e-14 82.4 161 36.6
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 3.9e-14 82.4 147 36.7
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 5.1e-14 82.0 144 38.9
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 6.7e-14 81.6 176 35.2
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 6.7e-14 81.6 144 38.2
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 6.7e-14 81.6 141 37.6
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 8.7e-14 81.3 161 35.4
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 8.7e-14 81.3 140 37.1
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 8.7e-14 81.3 140 37.1
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 8.7e-14 81.3 164 35.4
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 8.7e-14 81.3 144 38.9
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 8.7e-14 81.3 121 43.8
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 8.7e-14 81.3 140 38.6
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 8.7e-14 81.3 141 37.6
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 1.1e-13 80.9 140 39.3
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 1.1e-13 80.9 144 37.5
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 1.1e-13 80.9 140 37.1
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 1.5e-13 80.5 147 37.4
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.5e-13 80.5 161 37.3
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 1.5e-13 80.5 125 39.2
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 1.9e-13 80.1 161 37.3
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.9e-13 80.1 125 40.8
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 1.9e-13 80.1 144 37.5
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 1.9e-13 80.1 144 37.5
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 1.9e-13 80.1 147 35.4
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 2.5e-13 79.7 160 37.5
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.5e-13 79.7 161 34.2
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 3.3e-13 79.3 144 36.1
FAN26G0537 Fragaria x ananassa HOM05D002182 ORTHO05D004671 3.3e-13 79.3 161 37.3
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 3.3e-13 79.3 141 38.3
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 3.3e-13 79.3 168 34.5
MBI07_g47060_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 4.3e-13 79.0 141 36.9
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 4.3e-13 79.0 165 34.5
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 4.3e-13 79.0 144 38.2
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 5.7e-13 78.6 165 35.2
Solyc05g014730.1 Solanum lycopersicum HOM05D002182 ORTHO05D004671 5.7e-13 78.6 125 37.6
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 7.4e-13 78.2 161 37.3
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 7.4e-13 78.2 144 35.4
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 9.7e-13 77.8 161 34.8
QL10p041326 Quercus lobata HOM05D002182 ORTHO05D004671 9.7e-13 77.8 165 33.3
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 1.3e-12 77.4 148 34.5
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.6e-12 77.0 115 40.0
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 2.2e-12 76.6 165 35.2
DCAR_023889 Daucus carota HOM05D002182 ORTHO05D004671 2.2e-12 76.6 128 37.5
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.2e-12 76.6 149 35.6
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 2.8e-12 76.3 147 36.7
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 2.8e-12 76.3 168 35.7
Nitab4.5_0000120g0160 Nicotiana tabacum HOM05D002182 ORTHO05D004671 3.7e-12 75.9 144 35.4
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 4.8e-12 75.5 122 40.2
CBR_g74 Chara braunii HOM05D002182 ORTHO05D004671 4.8e-12 75.5 149 33.6
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 4.8e-12 75.5 162 37.0
SMO114G0082 Selaginella moellendorffii HOM05D002182 ORTHO05D004671 8.2e-12 74.7 154 33.8
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 1.1e-11 74.3 114 40.4
Ciclev10003112m.g Citrus clementina HOM05D002182 ORTHO05D004671 1.1e-11 74.3 161 34.8
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 1.1e-11 74.3 115 40.0
Nitab4.5_0001277g0030 Nicotiana tabacum HOM05D002182 ORTHO05D004671 1.4e-11 73.9 125 36.8
unitig_62.g23374 Utricularia gibba HOM05D002182 ORTHO05D004671 1.4e-11 73.9 115 40.0
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 2.4e-11 73.2 115 39.1
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 3.1e-11 72.8 161 37.9
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 5.3e-11 72.0 161 33.5
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 9.0e-11 71.2 144 34.0
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 1.5e-10 70.5 134 38.8
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 4.5e-10 68.9 111 37.8
PSO170G3411 Papaver somniferum HOM05D002182 ORTHO05D004671 7.7e-10 68.2 111 36.0
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 2.9e-09 66.2 164 31.7
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 1.1e-08 64.3 174 32.2
CSS0042552 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 1.2e-07 60.8 69 49.3
MCO11G433 Micromonas commoda HOM05D002182 ORTHO05D004671 4.6e-07 58.9 69 42.0
vmacro12744 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 1.8e-06 57.0 66 47.0
AUR62000512 Chenopodium quinoa HOM05D002182 ORTHO05D004671 3.9e-06 55.8 68 47.1


User provided reference genes

Program Settings