Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 8.4e-227 790.0 405 100.0
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 4.2e-109 399.1 316 67.7
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 5.5e-109 398.7 318 68.2
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 3.7e-105 386.0 333 63.4
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 3.4e-103 379.4 333 63.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 4.5e-103 379.0 329 61.7
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.1e-101 374.4 328 61.9
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.5e-101 373.2 328 61.6
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 7.2e-101 371.7 332 62.3
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 9.4e-101 371.3 331 61.9
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.6e-100 370.5 320 60.6
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.1e-100 370.2 327 61.5
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 6.1e-100 368.6 330 60.0
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 7.9e-100 368.2 328 58.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.0e-99 367.9 322 61.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-99 367.9 327 60.9
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.4e-99 367.5 327 60.9
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.3e-99 366.7 324 60.2
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.3e-99 366.7 322 61.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.1e-99 365.5 325 61.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.1e-99 365.5 329 60.2
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 5.1e-99 365.5 329 59.9
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 6.7e-99 365.2 320 60.3
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 8.8e-99 364.8 330 58.2
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 8.8e-99 364.8 325 59.1
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 8.8e-99 364.8 325 61.8
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.7e-98 362.1 330 59.4
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 5.7e-98 362.1 325 60.9
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 9.7e-98 361.3 327 59.3
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.7e-97 360.5 329 60.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.2e-97 360.1 327 57.8
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 3.7e-97 359.4 323 60.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 4.8e-97 359.0 325 57.8
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 6.3e-97 358.6 318 61.3
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 8.2e-97 358.2 330 58.2
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 8.2e-97 358.2 320 59.7
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 8.2e-97 358.2 322 60.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 8.2e-97 358.2 325 57.2
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-96 357.8 329 60.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.1e-96 356.3 321 57.6
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 3.1e-96 356.3 319 58.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.1e-96 355.9 329 60.2
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 5.3e-96 355.5 327 56.6
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 6.9e-96 355.1 345 57.1
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.2e-95 354.4 330 57.6
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.5e-95 354.0 330 58.2
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 2.0e-95 353.6 328 60.4
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.4e-95 352.8 321 57.3
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 4.5e-95 352.4 327 60.2
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 7.7e-95 351.7 327 56.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 1.0e-94 351.3 322 59.6
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-94 350.5 329 59.6
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 3.8e-94 349.4 330 57.3
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 5.0e-94 349.0 325 57.5
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 1.1e-93 347.8 329 59.3
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.1e-93 347.8 329 59.3
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.4e-93 347.4 321 57.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.5e-93 345.5 321 56.7
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.1e-92 343.6 321 57.3
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 2.1e-92 343.6 292 63.0
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.6e-92 342.8 320 56.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 3.6e-92 342.8 314 58.6
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 6.1e-92 342.0 328 57.0
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 7.9e-92 341.7 320 56.9
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 2.3e-91 340.1 348 53.2
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 3.0e-91 339.7 324 58.0
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 5.1e-91 339.0 359 53.5
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.7e-91 338.6 322 55.9
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.5e-90 337.4 331 56.5
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.5e-90 337.4 322 55.0
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 1.5e-90 337.4 322 54.3
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.0e-90 337.0 326 54.9
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.0e-90 337.0 330 56.7
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 3.3e-90 336.3 322 55.6
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 4.4e-90 335.9 322 56.5
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 4.4e-90 335.9 321 54.2
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 5.7e-90 335.5 326 55.5
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 7.4e-90 335.1 322 56.2
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 9.7e-90 334.7 326 55.2
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 9.7e-90 334.7 329 57.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 9.7e-90 334.7 322 54.3
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.3e-89 334.3 325 54.5
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 2.2e-89 333.6 326 55.5
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 2.8e-89 333.2 323 54.5
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.8e-89 332.4 326 54.9
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.8e-88 330.5 396 49.0
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 2.4e-88 330.1 330 55.8
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 3.1e-88 329.7 326 55.5
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 4.1e-88 329.3 323 54.8
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 5.3e-88 328.9 368 53.0
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.0e-88 328.6 335 53.1
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.2e-87 327.8 326 54.9
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.5e-87 327.4 322 53.7
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 2.6e-87 326.6 326 54.9
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.4e-87 326.2 326 55.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 2.9e-86 323.2 323 54.5
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 5.0e-86 322.4 281 63.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 9.4e-85 318.2 313 56.2
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 4.7e-84 315.8 325 55.4
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 6.1e-84 315.5 322 54.7
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.4e-83 314.3 311 54.0
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.1e-82 311.2 313 55.6
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 3.3e-82 309.7 290 58.6
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 9.7e-82 308.1 321 53.0
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 4.1e-80 302.8 327 51.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 7.0e-80 302.0 320 51.6
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 5.2e-75 285.8 313 51.1
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.4e-72 277.7 305 50.2
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 4.5e-71 272.7 316 49.7
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.5e-70 268.9 312 49.7
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.7e-68 262.7 304 50.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 8.0e-68 261.9 310 50.0
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 6.8e-67 258.8 325 46.8
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 5.7e-66 255.8 298 49.7
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 1.6e-60 237.7 276 50.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.3e-59 233.8 231 54.1
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.6e-58 230.3 327 46.5
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 6.3e-57 225.7 265 45.7
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.1e-56 224.9 198 57.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.1e-56 224.9 176 69.3
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 5.4e-56 222.6 189 59.8
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.0e-51 208.4 195 57.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.4e-51 208.0 303 40.9
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 2.9e-49 200.3 181 56.4
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.3e-49 198.7 193 54.9
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 7.0e-48 195.7 177 54.8
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 3.0e-46 190.3 301 39.9
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.2e-44 184.9 159 59.1
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 3.4e-42 176.8 134 64.2
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.2e-41 174.1 314 37.9
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 4.1e-40 169.9 137 62.8
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.2e-33 147.5 173 43.9
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 3.7e-33 146.7 88 78.4
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.9e-32 144.4 146 49.3
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 7.1e-32 142.5 131 55.0
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 1.2e-31 141.7 284 36.3
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 3.5e-31 140.2 116 62.9
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.0e-30 138.7 133 58.6
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.3e-30 138.3 258 36.8
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.5e-29 134.8 198 41.9
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.3e-29 133.7 131 50.4
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 5.6e-29 132.9 131 56.5
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 5.6e-29 132.9 136 54.4
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 5.8e-26 122.9 294 30.6
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 7.1e-24 115.9 125 52.8
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.0e-22 110.5 102 57.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.5e-21 108.2 245 35.5
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.5e-21 107.5 202 34.7
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.5e-21 107.5 139 44.6
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.6e-21 106.3 153 42.5
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-18 98.6 191 36.6
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 4.4e-18 96.7 127 44.9
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 4.4e-18 96.7 64 68.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 4.6e-15 86.7 82 51.2
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.6e-10 70.9 81 43.2
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.6e-10 70.9 81 43.2
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 9.9e-10 68.9 75 44.0
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 1.0e-06 58.9 112 33.9
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.3e-06 57.8 90 40.0


User provided reference genes

Program Settings