Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010182 Vanilla planifolia HOM05D003203 ORTHO05D003526 8.5e-128 460.3 224 100.0
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 3.5e-81 305.4 188 75.5
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.5e-81 305.4 188 76.1
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 2.3e-80 302.8 188 75.5
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 8.6e-80 300.8 188 75.5
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 1.1e-79 300.4 192 72.9
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 2.1e-78 296.2 188 75.0
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 8.0e-78 294.3 188 73.9
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 4.0e-77 292.0 188 73.9
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 6.8e-77 291.2 188 72.3
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 6.8e-77 291.2 188 72.9
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 8.9e-77 290.8 188 73.9
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 1.2e-76 290.4 188 75.5
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 1.2e-76 290.4 188 74.5
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 1.2e-76 290.4 189 74.1
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 1.5e-76 290.0 188 72.9
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 2.6e-76 289.3 188 71.8
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 4.4e-76 288.5 188 72.3
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 4.4e-76 288.5 188 73.4
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 5.8e-76 288.1 188 73.9
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 7.5e-76 287.7 188 73.4
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 7.5e-76 287.7 188 71.3
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 7.5e-76 287.7 185 74.6
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 9.8e-76 287.3 188 71.8
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 9.8e-76 287.3 188 71.8
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 9.8e-76 287.3 188 71.3
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 9.8e-76 287.3 188 72.9
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 9.8e-76 287.3 188 72.9
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.7e-75 286.6 188 71.8
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 2.2e-75 286.2 188 70.7
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 2.2e-75 286.2 188 72.9
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 2.2e-75 286.2 188 72.9
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 2.9e-75 285.8 189 73.0
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 2.9e-75 285.8 188 72.3
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 3.7e-75 285.4 188 72.3
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 3.7e-75 285.4 188 72.3
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 4.9e-75 285.0 188 72.9
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 4.9e-75 285.0 188 71.8
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 6.4e-75 284.6 188 72.9
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 6.4e-75 284.6 188 72.9
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 6.4e-75 284.6 188 72.9
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 8.3e-75 284.3 188 70.7
FAN17G1981 Fragaria x ananassa HOM05D003203 ORTHO05D003526 8.3e-75 284.3 188 71.8
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 1.1e-74 283.9 188 72.9
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.1e-74 283.9 185 74.6
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 1.1e-74 283.9 188 72.3
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.4e-74 283.5 187 71.7
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 1.4e-74 283.5 188 74.5
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.4e-74 283.5 188 69.7
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 1.9e-74 283.1 188 70.7
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 3.2e-74 282.3 188 71.3
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 3.2e-74 282.3 188 71.8
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 7.0e-74 281.2 188 70.7
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 7.0e-74 281.2 188 71.3
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.2e-74 280.8 188 69.7
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.2e-74 280.8 188 69.7
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 9.2e-74 280.8 189 73.0
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.2e-73 280.4 192 68.2
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.2e-73 280.4 188 71.8
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.2e-73 280.4 186 73.1
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 1.6e-73 280.0 189 71.4
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 2.0e-73 279.6 185 74.6
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 3.5e-73 278.9 188 72.3
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 4.6e-73 278.5 188 71.8
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 6.0e-73 278.1 192 66.1
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 6.0e-73 278.1 192 67.2
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 6.0e-73 278.1 192 66.1
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 6.0e-73 278.1 192 66.1
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 6.0e-73 278.1 188 70.2
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 6.0e-73 278.1 189 69.8
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 7.8e-73 277.7 188 69.7
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 7.8e-73 277.7 188 69.7
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 7.8e-73 277.7 188 68.1
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 1.0e-72 277.3 192 67.7
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 1.0e-72 277.3 192 68.2
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 1.7e-72 276.6 188 68.6
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 2.3e-72 276.2 188 71.3
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 5.0e-72 275.0 192 67.7
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 5.0e-72 275.0 192 66.7
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 8.6e-72 274.2 192 65.6
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 8.6e-72 274.2 192 65.6
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 8.6e-72 274.2 189 69.8
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.5e-71 273.5 188 69.1
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 5.6e-71 271.6 189 68.3
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.2e-70 270.4 188 68.6
Actinidia00021 Actinidia chinensis HOM05D003203 ORTHO05D003526 1.6e-70 270.0 188 68.6
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 2.1e-70 269.6 188 68.6
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 4.7e-70 268.5 188 69.1
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 1.4e-69 266.9 204 64.2
SpUn0831_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 1.4e-69 266.9 185 67.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 4.0e-69 265.4 192 65.6
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 6.8e-69 264.6 192 65.6
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 9.8e-68 260.8 185 68.6
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 3.7e-67 258.8 188 64.4
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 2.4e-66 256.1 185 67.6
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 5.4e-66 255.0 192 63.5
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 5.4e-66 255.0 192 63.5
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-65 253.4 188 66.0
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 2.1e-65 253.1 188 64.9
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 7.8e-65 251.1 248 52.8
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 6.6e-64 248.1 226 54.9
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 6.6e-64 248.1 192 63.5
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 3.3e-63 245.7 192 64.6
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 4.3e-63 245.4 188 66.0
SHI27629 Sapria himalayana HOM05D003203 ORTHO05D003526 2.8e-62 242.7 196 63.8
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.8e-61 240.0 234 53.8
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 1.2e-60 237.3 188 63.3
Hund28195 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.0e-60 236.5 188 66.0
Hund28197 Selenicereus undatus HOM05D003203 ORTHO05D003526 2.0e-60 236.5 188 66.0
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 2.6e-60 236.1 188 61.2
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 7.6e-60 234.6 185 61.6
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 7.6e-60 234.6 166 67.5
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 7.6e-60 234.6 265 49.1
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 1.9e-58 229.9 214 56.5
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.4e-58 229.6 188 61.2
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 9.2e-58 227.6 187 65.2
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 7.8e-57 224.6 208 58.2
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 8.6e-56 221.1 188 61.7
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.5e-55 219.5 188 60.6
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 8.1e-54 214.5 188 58.0
AagrBONN_evm.TU.Sc2ySwM_117.4034 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_245.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_246.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_341.2 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.2e-51 206.5 193 55.4
AagrBONN_evm.TU.Sc2ySwM_117.4029 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.9e-51 206.1 193 54.9
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 3.8e-51 205.7 188 54.3
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 1.9e-50 203.4 152 66.4
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 1.7e-48 196.8 137 71.5
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 2.1e-46 189.9 223 52.5
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 1.5e-44 183.7 192 47.9
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 5.8e-44 181.8 153 60.8
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 2.1e-41 173.3 189 49.7
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 2.6e-36 156.4 89 75.3
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.3e-35 154.1 189 45.5
Nn2g13009 Nelumbo nucifera HOM05D003203 ORTHO05D003526 2.7e-33 146.4 100 72.0
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.9e-27 125.6 193 41.5
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.9e-27 125.6 193 41.5
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 2.9e-19 99.8 60 76.7
RcHm_v2.0_Chr3g0490601 Rosa chinensis HOM05D003203 ORTHO05D003526 1.0e-08 64.7 67 53.7
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.7e-07 58.9 34 73.5
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 8.2e-06 55.1 33 78.8


User provided reference genes

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