Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 1.4e-37 159.1 77 100.0
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 3.9e-32 141.0 87 83.9
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 5.6e-31 137.1 85 82.4
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.3e-30 136.0 85 81.2
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 3.7e-30 134.4 85 81.2
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 4.8e-30 134.0 85 80.0
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 4.8e-30 134.0 85 80.0
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 4.8e-30 134.0 85 80.0
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 4.8e-30 134.0 85 80.0
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 4.8e-30 134.0 85 80.0
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 4.8e-30 134.0 85 80.0
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 6.2e-30 133.7 84 82.1
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 6.2e-30 133.7 85 81.2
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 80.0
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 81.2
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 81.2
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 80.0
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 80.0
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 80.0
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 80.0
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 8.1e-30 133.3 85 81.2
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 1.1e-29 132.9 85 80.0
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.4e-29 132.5 84 81.0
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 1.4e-29 132.5 85 80.0
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 1.4e-29 132.5 84 81.0
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 1.4e-29 132.5 84 81.0
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 1.8e-29 132.1 84 81.0
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 80.0
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 78.8
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.4e-29 131.7 82 82.9
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 2.4e-29 131.7 82 82.9
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 2.4e-29 131.7 82 82.9
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 80.0
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 80.0
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 80.0
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 78.8
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 2.4e-29 131.7 85 78.8
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 3.1e-29 131.3 86 76.7
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.1e-29 131.3 84 79.8
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.1e-29 131.3 84 79.8
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 3.1e-29 131.3 86 76.7
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 3.1e-29 131.3 84 79.8
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 3.1e-29 131.3 85 78.8
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 3.1e-29 131.3 86 76.7
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 3.1e-29 131.3 85 78.8
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 4.0e-29 131.0 85 78.8
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 4.0e-29 131.0 84 79.8
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 4.0e-29 131.0 85 78.8
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 4.0e-29 131.0 84 79.8
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 5.3e-29 130.6 86 76.7
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 6.9e-29 130.2 84 79.8
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 6.9e-29 130.2 85 77.6
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-29 130.2 85 77.6
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-29 130.2 85 77.6
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 6.9e-29 130.2 85 77.6
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 6.9e-29 130.2 85 76.5
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 9.0e-29 129.8 85 77.6
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 1.2e-28 129.4 85 76.5
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 1.2e-28 129.4 85 76.5
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 1.5e-28 129.0 84 78.6
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.5e-28 129.0 85 76.5
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.0e-28 128.6 84 78.6
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.0e-28 128.6 84 77.4
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 2.6e-28 128.3 85 76.5
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.6e-28 128.3 85 77.6
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 2.6e-28 128.3 85 76.5
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 4.5e-28 127.5 85 75.3
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 4.5e-28 127.5 84 77.4
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 5.8e-28 127.1 85 75.3
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 1.0e-27 126.3 84 78.6
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 1.0e-27 126.3 84 78.6
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 1.0e-27 126.3 84 78.6
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 4.9e-27 124.0 86 74.4
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 4.9e-27 124.0 85 72.9
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 8.4e-27 123.2 98 68.4
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 8.4e-27 123.2 81 77.8
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 1.1e-26 122.9 85 72.9
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 4.2e-26 120.9 86 70.9
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 5.5e-26 120.6 59 98.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.2e-25 119.4 59 96.6
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 2.1e-25 118.6 78 79.5
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 3.5e-25 117.9 79 78.5
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 6.0e-25 117.1 80 75.0
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 1.0e-24 116.3 82 72.0
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 2.3e-24 115.2 77 77.9
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 2.3e-24 115.2 77 77.9
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 3.9e-24 114.4 77 76.6
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 5.1e-24 114.0 77 76.6
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 5.1e-24 114.0 77 76.6
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 1.1e-23 112.8 77 76.6
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 1.1e-21 106.3 85 62.4
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 6.9e-21 103.6 59 86.4
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 2.6e-20 101.7 52 92.3
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 7.6e-20 100.1 52 92.3
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 7.9e-17 90.1 108 51.9
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 6.7e-16 87.0 85 63.5
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.3e-14 82.8 60 73.3
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.6e-14 82.4 59 72.9
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 2.2e-14 82.0 77 50.6
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 1.7e-11 72.4 76 59.2
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 5.5e-10 67.4 53 71.7
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 7.2e-10 67.0 51 70.6
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 1.0e-08 63.2 52 65.4
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 1.0e-08 63.2 51 66.7
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 2.3e-08 62.0 32 90.6
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 3.9e-08 61.2 48 68.8


User provided reference genes

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