Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003322 Vanilla planifolia HOM05D004823 ORTHO05D005814 0.0e+00 1772.3 888 100.0
HPP92_003324 Vanilla planifolia HOM05D004823 ORTHO05D005814 5.3e-250 868.2 437 99.3
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 3.5e-241 839.0 969 48.5
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 1.2e-236 823.9 962 48.4
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 6.6e-232 808.1 972 47.3
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 6.4e-227 791.6 1000 45.1
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 7.3e-223 778.1 984 45.6
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 1.2e-222 777.3 945 47.3
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 1.6e-222 776.9 1041 43.5
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 4.7e-222 775.4 974 45.0
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 2.3e-221 773.1 987 44.3
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 2.2e-219 766.5 933 46.5
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 2.7e-217 759.6 1022 44.0
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 4.6e-217 758.8 850 48.9
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 6.0e-217 758.4 1022 43.6
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 2.3e-216 756.5 959 44.9
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 1.2e-214 750.7 1005 44.2
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 2.8e-214 749.6 876 47.5
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 8.1e-214 748.0 989 45.0
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 4.0e-213 745.7 989 45.4
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 5.2e-213 745.3 1019 43.7
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 1.5e-212 743.8 959 44.6
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 1.3e-211 740.7 1003 43.2
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 2.2e-211 740.0 962 44.4
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 2.2e-211 740.0 966 45.2
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 1.9e-210 736.9 943 44.4
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 2.4e-210 736.5 1039 41.9
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 3.2e-210 736.1 966 44.6
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 7.1e-210 734.9 1027 42.7
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 1.6e-209 733.8 1039 42.5
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 7.8e-209 731.5 949 45.6
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 1.7e-208 730.3 974 43.6
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 5.1e-208 728.8 1039 41.6
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 6.6e-208 728.4 977 44.8
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 1.1e-207 727.6 992 43.5
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 4.3e-207 725.7 966 44.7
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 1.2e-206 724.2 957 43.7
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 3.6e-206 722.6 953 43.4
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 1.4e-205 720.7 1001 42.6
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 1.4e-205 720.7 994 42.4
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 5.2e-205 718.8 961 42.8
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 6.8e-205 718.4 985 43.9
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 2.6e-204 716.5 1031 42.0
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 9.9e-204 714.5 942 45.1
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 3.2e-202 709.5 958 43.3
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 7.1e-202 708.4 960 43.5
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 9.2e-202 708.0 970 42.6
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 9.2e-202 708.0 970 42.6
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 1.6e-201 707.2 967 42.5
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 3.5e-201 706.1 968 44.1
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 4.6e-201 705.7 973 43.5
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 4.6e-201 705.7 968 42.7
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 6.0e-201 705.3 943 44.5
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 7.8e-201 704.9 967 42.3
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 1.3e-200 704.1 867 46.0
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.7e-200 703.7 985 43.6
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 2.3e-200 703.4 940 44.4
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 1.9e-199 700.3 1001 42.0
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 7.3e-199 698.4 967 41.9
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 1.6e-198 697.2 957 41.9
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 3.1e-197 693.0 1005 43.1
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 1.2e-196 691.0 957 44.2
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 5.8e-196 688.7 844 46.2
HPP92_003323 Vanilla planifolia HOM05D004823 ORTHO05D005814 5.8e-196 688.7 401 89.3
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 7.6e-196 688.3 987 42.2
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 7.1e-194 681.8 970 42.3
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 1.2e-193 681.0 966 42.8
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 1.3e-192 677.6 977 43.0
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 6.2e-190 668.7 830 47.0
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 2.4e-189 666.8 1015 41.5
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 9.0e-189 664.8 933 44.1
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 7.6e-188 661.8 1148 37.3
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 3.8e-187 659.4 1003 42.4
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 4.9e-187 659.1 1024 40.5
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 8.4e-187 658.3 994 40.2
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 1.4e-186 657.5 875 43.9
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 9.3e-186 654.8 840 47.0
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.3e-184 651.0 1102 39.3
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 3.0e-184 649.8 1041 39.0
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 8.7e-184 648.3 908 42.2
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 4.8e-182 642.5 1095 38.4
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 1.1e-181 641.3 621 53.1
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 7.6e-180 635.2 1085 38.9
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 1.4e-178 630.9 988 41.2
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 5.6e-175 619.0 956 41.1
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 7.4e-175 618.6 872 42.7
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 1.4e-173 614.4 965 40.5
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 1.2e-172 611.3 985 40.2
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 2.0e-172 610.5 841 44.1
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 2.0e-172 610.5 615 51.4
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 2.1e-161 573.9 1015 38.3
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 8.8e-160 568.5 874 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2737 Anthoceros agrestis HOM05D004823 ORTHO05D005814 3.8e-155 553.1 622 46.9
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 1.0e-152 545.0 541 54.0
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 1.4e-144 518.1 690 45.2
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 8.8e-144 515.4 657 43.8
ATR0705G006 Amborella trichopoda HOM05D004823 ORTHO05D005814 2.3e-123 447.6 438 53.4
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 2.8e-121 440.7 617 42.0
Sabra14G0140300 Salix brachista HOM05D004823 ORTHO05D005814 1.8e-120 438.0 429 55.2
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 4.7e-113 413.3 912 33.7
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 6.4e-102 376.3 505 42.0
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 2.3e-96 357.8 696 35.3
SHI13671 Sapria himalayana HOM05D004823 ORTHO05D005814 1.9e-93 348.2 448 45.5
Cfa026676 Carpinus fangiana HOM05D004823 ORTHO05D005814 1.5e-74 285.4 615 32.5
Sabra14G0140400 Salix brachista HOM05D004823 ORTHO05D005814 5.6e-74 283.5 476 35.9
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 7.3e-74 283.1 306 48.0
GSVIVG01018406001 Vitis vinifera HOM05D004823 ORTHO05D005814 1.3e-67 262.3 274 50.7
ATR0705G062 Amborella trichopoda HOM05D004823 ORTHO05D005814 4.2e-61 240.7 388 39.9
CDE11G0342 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 1.9e-58 231.9 272 46.3
RcHm_v2.0_Chr2g0122971 Rosa chinensis HOM05D004823 ORTHO05D005814 3.3e-58 231.1 224 49.6
Cpa.g.sc10.21 Carica papaya HOM05D004823 ORTHO05D005814 1.6e-57 228.8 549 30.6
SEGI_26005 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 2.4e-56 224.9 272 45.2
PRCOL_00002243 Prasinoderma coloniale HOM05D004823 ORTHO05D005814 1.0e-51 209.5 638 27.9
CDE11G0754 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 4.8e-41 174.1 400 35.0
Cpa.g.sc10.23 Carica papaya HOM05D004823 ORTHO05D005814 2.6e-39 168.3 142 59.9
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 7.7e-39 166.8 152 49.3
Nitab4.5_0007244g0010 Nicotiana tabacum HOM05D004823 ORTHO05D005814 9.7e-34 149.8 118 63.6
CARHR086610 Cardamine hirsuta HOM05D004823 ORTHO05D005814 3.7e-33 147.9 173 49.7
SHI13672 Sapria himalayana HOM05D004823 ORTHO05D005814 4.8e-33 147.5 123 57.7
SEGI_04973 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 3.2e-29 134.8 111 53.2
Lalb_Chr03g0040701 Lupinus albus HOM05D004823 ORTHO05D005814 1.4e-27 129.4 405 28.6
MBI13_g01094_MAGBIO Magnolia biondii HOM05D002050 ORTHO05D001949 1.1e-24 119.8 81 69.1
Aqoxy5G01067 Aquilegia oxysepala HOM05D002795 ORTHO05D003219 7.7e-23 113.6 285 34.4
Psat2g050440 Pisum sativum HOM05D004823 ORTHO05D036791 2.9e-22 111.7 110 46.4
Nn2g14687 Nelumbo nucifera HOM05D004823 ORTHO05D005814 5.0e-22 110.9 73 68.5
Psat2g050360 Pisum sativum HOM05D004823 ORTHO05D005814 1.1e-21 109.8 93 52.7
Psat5g098920 Pisum sativum HOM05D004823 ORTHO05D005814 1.5e-21 109.4 85 55.3
Atru.chr5.137 Acer truncatum HOM05D004823 ORTHO05D005814 7.2e-21 107.1 82 63.4
Cc07_g20090 Coffea canephora HOM05D004823 ORTHO05D005814 3.6e-20 104.8 89 56.2
MBI05_g27233_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 2.3e-19 102.1 65 70.8
RcHm_v2.0_Chr2g0122961 Rosa chinensis HOM05D004823 ORTHO05D005814 3.0e-19 101.7 76 61.8
MBI17_g09706_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 2.0e-18 99.0 69 65.2
Cre12.g528200 Chlamydomonas reinhardtii HOM05D004823 ORTHO05D005814 2.8e-17 95.1 468 23.5
MBI08_g06419_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 8.3e-17 93.6 65 66.2
MBI08_g07078_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 3.5e-15 88.2 65 64.6
arahy.Tifrunner.gnm1.ann1.3YFD1D Arachis hypogaea HOM05D000922 ORTHO05D005814 3.8e-14 84.7 119 42.0
TPR.G17006 Trifolium pratense HOM05D004823 ORTHO05D005814 2.8e-09 68.6 51 62.7
RcHm_v2.0_Chr2g0122951 Rosa chinensis HOM05D004823 ORTHO05D005814 4.1e-08 64.7 132 35.6
MBI15_g07200_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 1.2e-07 63.2 39 66.7


User provided reference genes

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