Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.1e-250 867.1 457 100.0
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-247 859.0 457 98.9
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.0e-238 827.0 456 94.5
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.1e-235 819.7 457 95.4
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.3e-233 812.0 456 94.3
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.4e-232 808.1 456 94.1
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 3.5e-221 771.5 460 88.7
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.9e-187 659.4 454 76.7
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 5.8e-184 647.9 452 75.2
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 7.6e-184 647.5 459 73.4
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.2e-183 646.0 459 73.2
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 5.5e-182 641.3 455 72.7
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 4.6e-181 638.3 461 71.8
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.5e-179 632.5 456 71.3
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.3e-179 631.7 456 71.7
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.7e-179 631.3 456 71.7
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.7e-178 628.6 457 70.5
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.4e-177 625.9 450 71.1
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 2.4e-177 625.9 459 73.6
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 9.0e-177 624.0 460 71.3
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 1.2e-176 623.6 454 70.5
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.5e-176 623.2 457 71.3
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.3e-175 620.2 460 71.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.9e-175 619.0 451 74.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.4e-174 616.7 457 70.0
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.4e-174 616.7 457 70.5
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 9.3e-174 614.0 471 68.2
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 9.3e-174 614.0 471 68.2
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.1e-173 611.3 456 70.4
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.0e-172 610.5 456 70.4
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.0e-172 609.0 459 70.8
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 8.7e-172 607.4 459 70.2
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 9.7e-171 604.0 463 69.8
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.6e-170 603.2 455 69.5
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 8.2e-170 600.9 448 71.2
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 8.2e-170 600.9 449 69.7
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 1.1e-169 600.5 454 67.6
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.1e-169 600.5 452 69.5
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.6e-168 595.9 453 70.4
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 2.6e-168 595.9 452 69.2
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 5.9e-168 594.7 451 69.6
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 7.7e-168 594.3 451 69.4
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 7.7e-168 594.3 449 67.7
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.7e-167 593.2 455 68.6
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.7e-167 593.2 444 69.4
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 6.5e-167 591.3 455 68.1
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 8.5e-167 590.9 451 69.0
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.4e-166 590.1 453 68.4
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 7.2e-166 587.8 454 68.5
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 9.4e-166 587.4 459 68.4
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.2e-165 587.0 451 68.3
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.1e-165 584.7 474 66.2
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 2.3e-164 582.8 448 69.9
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.0e-163 579.7 456 68.4
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.3e-163 578.9 450 68.7
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.7e-163 578.2 452 69.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 5.7e-163 578.2 432 69.7
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 7.4e-163 577.8 451 68.7
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 2.2e-162 576.2 453 67.1
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.8e-162 575.1 435 71.0
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 8.2e-162 574.3 452 69.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.4e-161 573.5 452 71.2
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.8e-161 573.2 454 65.2
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.4e-161 572.8 460 65.4
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 9.1e-161 570.9 455 65.5
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.5e-160 570.1 466 65.2
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 2.0e-160 569.7 457 65.4
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-159 567.0 458 65.3
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.4e-158 563.5 456 69.7
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.1e-155 553.9 456 65.4
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.5e-155 553.5 452 66.8
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 4.4e-155 552.0 455 67.9
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 4.8e-154 548.5 454 65.2
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.8e-153 546.6 454 65.4
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 4.5e-152 542.0 414 69.1
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.1e-149 531.6 448 65.4
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 8.0e-149 531.2 455 63.1
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 8.0e-149 531.2 447 62.0
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 1.0e-148 530.8 537 57.5
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 4.0e-148 528.9 454 63.7
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 8.8e-148 527.7 452 61.9
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.0e-147 526.6 503 59.8
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 4.1e-145 518.8 450 62.0
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 9.1e-145 517.7 455 62.2
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 2.5e-142 509.6 475 60.6
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 8.0e-141 504.6 467 60.6
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 7.5e-139 498.0 407 66.1
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.2e-138 496.5 322 86.6
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 3.7e-138 495.7 468 59.0
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 3.8e-135 485.7 442 60.0
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 5.0e-135 485.3 449 58.8
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 8.6e-135 484.6 420 64.0
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 4.7e-133 478.8 431 60.1
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.0e-132 477.6 456 58.8
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 2.0e-131 473.4 470 55.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.0e-131 473.4 431 58.9
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 8.3e-130 468.0 365 69.6
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.3e-127 459.9 273 82.8
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 8.0e-125 451.4 469 54.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.2e-122 443.4 264 82.2
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 9.5e-118 427.9 361 61.2
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 9.5e-118 427.9 249 83.9
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 7.5e-115 418.3 251 81.7
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 1.1e-113 414.5 436 52.8
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 9.2e-113 411.4 333 63.7
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.5e-110 404.1 408 52.9
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 4.7e-109 399.1 443 48.8
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 6.6e-103 378.6 224 83.0
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.6e-101 374.0 439 50.6
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 3.9e-95 352.8 488 43.4
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 5.1e-95 352.4 424 49.5
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 6.2e-93 345.5 326 63.2
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 8.1e-93 345.1 376 53.7
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 2.9e-90 336.7 289 66.1
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 4.5e-75 286.2 331 54.1
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 3.2e-73 280.0 264 57.6
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.8e-71 274.2 295 51.2
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.9e-71 273.1 296 52.7
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 5.1e-63 246.1 246 58.5
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 4.1e-60 236.5 211 62.1
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 6.1e-56 222.6 222 59.0
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.5e-54 218.0 455 32.5
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.7e-53 213.4 218 53.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 5.3e-52 209.5 268 45.1
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.5e-51 208.0 403 38.2
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 9.4e-49 198.7 138 65.2
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-46 191.8 106 91.5
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 9.7e-46 188.7 255 42.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.9e-41 174.5 86 94.2
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 8.0e-40 169.1 111 77.5
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.9e-39 166.8 155 56.1
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 8.8e-39 165.6 91 85.7
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 9.4e-33 145.6 74 90.5
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.2e-30 138.7 87 73.6
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 6.3e-29 132.9 86 74.4
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.1e-25 122.1 256 31.2
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 6.8e-23 112.8 95 61.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.7e-19 100.9 186 38.7
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.5e-19 100.5 82 69.5
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 7.7e-19 99.4 67 71.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 3.8e-18 97.1 69 75.4
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 5.7e-14 83.2 84 58.3
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 9.8e-14 82.4 73 54.8
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.3e-13 82.0 51 76.5
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 7.8e-11 72.8 139 35.3
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 4.4e-06 57.0 93 40.9


User provided reference genes

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