Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 2.1e-183 647.1 961 100.0
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.0e-181 640.6 962 99.8
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 4.4e-157 559.7 959 95.4
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 9.5e-136 488.8 961 88.6
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 5.4e-131 473.0 954 87.9
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.5e-120 438.3 356 68.5
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 6.7e-89 333.2 235 74.0
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.9e-88 331.6 308 61.0
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 4.1e-86 323.9 314 58.9
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.5e-85 322.0 369 55.0
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.9e-84 317.8 245 69.8
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.4e-83 315.5 291 61.5
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 3.2e-83 314.3 306 59.2
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.2e-83 314.3 307 57.7
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 5.5e-83 313.5 302 56.3
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 5.5e-83 313.5 258 65.9
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 5.5e-83 313.5 246 65.9
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 7.2e-83 313.2 306 57.5
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 7.2e-83 313.2 316 57.9
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 7.2e-83 313.2 245 66.5
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 7.2e-83 313.2 248 66.1
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 9.4e-83 312.8 314 56.7
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.2e-82 312.4 310 55.8
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 7.9e-82 309.7 294 60.5
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.4e-81 308.9 246 66.3
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.4e-81 308.9 201 74.6
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.8e-81 308.5 238 68.9
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.8e-81 308.5 256 64.5
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.3e-81 308.1 297 58.9
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.3e-81 308.1 316 54.4
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.1e-80 305.8 248 65.3
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.0e-80 305.1 299 57.9
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 2.0e-80 305.1 313 56.2
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.6e-80 304.7 312 56.4
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 7.4e-80 303.1 319 55.8
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 7.4e-80 303.1 301 59.1
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 9.7e-80 302.8 189 75.7
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 9.7e-80 302.8 345 60.9
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.3e-79 302.4 316 55.4
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.8e-79 301.2 247 64.4
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 2.8e-79 301.2 320 55.3
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 3.7e-79 300.8 214 69.6
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 4.8e-79 300.4 308 56.5
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 4.8e-79 300.4 248 62.5
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 6.3e-79 300.1 302 56.3
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.1e-78 299.3 246 66.7
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.4e-78 298.1 237 65.0
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 4.1e-78 297.4 310 57.1
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 5.3e-78 297.0 244 63.5
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 5.3e-78 297.0 265 56.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 6.9e-78 296.6 304 55.6
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 9.1e-78 296.2 304 54.9
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.5e-77 295.4 240 64.6
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 2.6e-77 294.7 246 64.2
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 4.5e-77 293.9 302 56.0
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 4.5e-77 293.9 244 63.9
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 5.9e-77 293.5 300 55.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.7e-77 293.1 240 63.3
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.3e-76 292.4 308 53.6
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.2e-76 291.6 317 54.6
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.5e-76 290.0 256 61.3
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.1e-75 289.3 269 55.4
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.4e-75 288.9 245 62.4
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.4e-75 288.9 307 55.4
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 3.2e-75 287.7 306 52.9
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 4.2e-75 287.3 305 53.8
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 5.5e-75 287.0 307 53.4
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 2.7e-74 284.6 315 52.1
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.7e-74 284.6 307 54.7
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 3.6e-74 284.3 253 59.7
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 6.1e-74 283.5 309 53.1
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 3.0e-73 281.2 293 53.6
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 3.9e-73 280.8 301 52.2
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 3.9e-73 280.8 296 56.1
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 3.9e-73 280.8 358 46.6
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.1e-72 279.3 246 60.6
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.1e-72 279.3 246 60.6
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.0e-72 278.5 248 59.3
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.0e-72 278.5 248 59.3
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 2.0e-72 278.5 196 67.9
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 2.6e-72 278.1 240 60.4
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 4.8e-71 273.9 253 55.7
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 4.8e-71 273.9 246 57.3
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 7.0e-70 270.0 186 69.9
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 7.0e-70 270.0 206 61.2
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 4.5e-69 267.3 312 51.6
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 7.2e-67 260.0 240 60.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.1e-66 258.5 249 53.4
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.6e-66 257.7 201 64.7
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 2.0e-64 251.9 205 62.9
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 5.9e-61 240.4 198 59.6
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 2.7e-58 231.5 198 56.1
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 3.6e-58 231.1 149 76.5
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 4.7e-58 230.7 191 67.5
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.8e-57 226.9 325 45.8
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 9.8e-56 223.0 194 57.2
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 4.8e-55 220.7 146 76.0
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.8e-55 220.7 169 62.1
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 9.1e-54 216.5 159 65.4
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 4.7e-50 204.1 129 76.7
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 3.7e-47 194.5 189 48.7
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 4.3e-43 181.0 185 47.0
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.2e-42 179.5 129 69.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 6.1e-42 177.2 187 47.1
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 9.8e-40 169.9 137 59.9
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 3.5e-37 161.4 111 73.0
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 8.6e-36 156.8 186 44.6
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.3e-35 154.8 186 44.6
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 9.8e-32 143.3 77 84.4
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.3e-31 142.9 115 62.6
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.7e-31 142.5 87 78.2
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 2.9e-31 141.7 202 43.6
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.7e-31 141.4 219 34.7
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.9e-30 139.0 113 62.8
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.4e-30 138.7 114 65.8
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 3.2e-30 138.3 115 65.2
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 4.1e-30 137.9 112 62.5
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.2e-29 136.3 78 79.5
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.5e-29 134.8 120 58.3
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.0e-28 131.7 88 70.5
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.5e-27 129.4 115 60.0
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 2.5e-27 128.6 201 40.3
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 1.2e-26 126.3 86 67.4
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.4e-25 122.9 90 64.4
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.2e-25 120.9 114 55.3
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 8.9e-25 120.2 121 57.0
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.6e-24 118.6 86 58.1
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.5e-21 108.2 78 62.8
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.1e-19 103.2 70 72.9
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 7.6e-16 90.5 58 69.0
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.6e-13 82.8 44 86.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 6.6e-12 77.4 48 70.8
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 8.6e-12 77.0 85 49.4
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 4.3e-11 74.7 79 49.4
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.1e-09 70.1 45 73.3
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 5.2e-09 67.8 152 30.9
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 2.6e-08 65.5 43 69.8
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 2.6e-08 65.5 43 69.8
SGA_v2.0_scaffold49G18235 Striga asiatica HOM05D000285 ORTHO05D000241 5.8e-08 64.3 107 32.7
SMO361G0645 Selaginella moellendorffii HOM05D000142 ORTHO05D001253 7.1e-06 57.4 84 41.7
Aa31LG5G12290 Aethionema arabicum HOM05D000285 ORTHO05D001781 9.3e-06 57.0 135 31.9


User provided reference genes

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