Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1824.3 934 100.0
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1798.5 951 97.6
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1795.8 952 97.4
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1643.2 966 88.7
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1621.3 909 90.0
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1600.5 956 87.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1600.1 958 87.6
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1587.0 955 86.7
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1581.6 955 86.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1573.1 965 84.0
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1558.9 967 85.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1554.7 962 82.6
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 960 83.0
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 954 83.5
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1532.7 962 82.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1530.4 959 81.4
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1529.2 958 83.4
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1528.1 965 82.2
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 958 82.8
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1526.9 963 81.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 960 81.1
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1525.8 962 82.2
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 963 81.9
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 911 83.5
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1524.2 960 81.5
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 986 81.1
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 957 82.3
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 959 81.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1519.6 961 82.3
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1517.7 957 81.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1517.3 962 81.8
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1516.9 961 80.7
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 960 81.9
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1514.6 959 79.7
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 959 80.9
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1513.8 959 80.8
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1512.3 913 82.8
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 959 81.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1511.5 956 80.9
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1511.1 958 80.9
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1509.6 955 81.6
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1504.2 959 81.8
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1501.9 963 79.6
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 963 80.8
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1496.5 961 79.9
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1495.7 961 79.9
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1495.3 913 81.1
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 959 80.4
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 960 79.0
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1492.2 959 81.2
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1491.9 960 79.7
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1491.9 955 79.0
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1491.5 964 79.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1490.3 957 81.1
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 967 77.8
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 962 78.5
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1487.6 958 79.1
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1487.6 960 79.1
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1487.6 967 78.4
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1484.5 977 78.0
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1477.6 959 79.4
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1477.6 965 78.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1476.8 963 79.9
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1476.8 962 79.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1466.1 963 79.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1465.7 959 78.4
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1463.0 961 78.4
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1460.7 955 78.0
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 916 80.1
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 984 75.7
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 917 77.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1451.4 962 77.8
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1449.1 924 79.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 961 78.1
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 952 78.5
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 919 77.4
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1437.6 980 74.8
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1436.0 963 77.2
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1429.1 980 75.2
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 980 75.9
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1426.8 961 77.7
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 967 76.8
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 1184 65.8
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1419.8 961 77.4
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1417.9 953 77.4
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1415.2 983 75.8
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1415.2 983 75.8
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1413.7 927 76.7
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1412.1 975 75.1
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1409.8 954 76.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1407.5 959 75.5
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 960 76.0
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1403.7 972 74.9
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1399.0 986 74.0
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1394.0 957 74.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 910 78.5
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1387.5 989 73.1
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1379.8 952 73.5
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1378.2 962 71.7
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1370.5 831 81.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1369.4 962 74.5
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1358.6 839 79.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1350.9 953 72.2
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1348.2 918 73.9
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1342.4 949 70.4
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1337.4 901 74.7
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1308.5 903 73.1
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1305.0 906 70.8
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1287.7 956 69.1
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1286.6 785 83.2
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1260.7 787 80.3
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1211.8 925 65.2
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1208.7 726 82.6
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1173.3 942 64.4
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1161.0 786 72.3
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1121.3 688 82.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1110.9 985 58.7
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1099.3 952 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1093.6 982 56.8
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1082.0 966 58.6
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 5.7e-303 1044.3 720 76.2
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 9.5e-282 973.8 662 76.1
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.9e-278 961.4 786 60.4
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 4.1e-269 931.8 670 73.7
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.4e-256 889.4 592 77.5
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.9e-246 855.9 561 77.5
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 6.4e-238 828.2 505 82.4
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 6.7e-227 791.6 589 70.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.1e-224 782.7 498 77.9
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 4.4e-210 735.7 461 84.4
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-178 631.3 386 81.3
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-178 631.3 409 81.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.5e-170 604.4 1027 37.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 9.2e-152 542.0 440 62.0
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.6e-151 541.2 409 64.8
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 9.3e-136 488.8 820 36.8
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 7.1e-128 462.6 402 63.7
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.8e-116 424.1 253 81.0
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.1e-111 407.9 224 88.8
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.3e-109 400.2 831 33.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 6.3e-108 396.4 279 69.9
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.9e-104 384.8 1051 27.6
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 5.5e-96 356.7 253 68.4
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 5.5e-96 356.7 253 68.4
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 6.1e-95 353.2 250 72.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 3.1e-83 314.3 304 57.2
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.5e-80 305.4 529 37.8
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.4e-59 235.7 147 76.2
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.0e-54 217.6 174 55.2
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 3.7e-52 211.1 149 65.8
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 3.7e-52 211.1 149 65.8
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 3.9e-49 201.1 139 66.9
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.3e-48 198.0 118 79.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 8.0e-47 193.4 238 49.6
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 6.4e-44 183.7 166 56.0
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 1.2e-39 169.5 99 80.8
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.6e-39 167.9 104 81.7
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.8e-38 165.6 141 51.8
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 1.2e-37 162.9 122 69.7
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.7e-36 157.9 111 71.2
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-34 152.9 76 89.5
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.5e-34 151.4 76 88.2
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.6e-34 151.0 75 90.7
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.3e-33 148.7 76 86.8
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-32 146.4 114 68.4
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.3e-32 144.4 75 85.3
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.3e-32 144.4 74 87.8
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 2.8e-31 141.7 98 73.5
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.9e-27 129.0 134 50.0
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.4e-27 128.6 72 84.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.2e-27 128.3 109 55.0
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.2e-26 126.3 122 51.6
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 2.1e-26 125.6 123 53.7
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 4.3e-24 117.9 130 53.1
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.6e-24 117.5 83 74.7
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.5e-16 92.0 266 25.6
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.6e-15 89.4 82 57.3
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 3.8e-12 78.2 56 69.6
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 2.4e-11 75.5 131 44.3
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.2e-10 73.2 46 65.2
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 2.1e-07 62.4 48 58.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.8e-07 62.0 68 48.5


User provided reference genes

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