Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 0.0e+00 1254.6 635 100.0
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 0.0e+00 1079.7 635 87.1
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 6.2e-309 1063.5 635 86.3
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 3.9e-303 1044.3 633 82.8
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 1.9e-302 1042.0 635 82.8
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 2.0e-299 1031.9 629 83.0
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 2.1e-293 1011.9 635 80.2
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.1e-292 1009.6 637 79.9
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 9.0e-276 953.4 635 75.0
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.1e-270 936.4 635 74.3
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 9.7e-270 933.3 643 73.4
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 1.4e-268 929.5 643 75.6
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 6.5e-266 920.6 669 71.2
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 8.5e-266 920.2 636 71.7
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 2.7e-264 915.2 636 72.5
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 3.6e-264 914.8 635 73.9
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 3.0e-263 911.8 635 72.3
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.3e-261 906.4 636 71.5
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 1.3e-261 906.4 636 71.2
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 1.7e-261 906.0 635 72.0
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 2.8e-261 905.2 635 72.1
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 3.1e-260 901.7 635 72.4
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 5.3e-260 901.0 635 71.7
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 1.7e-258 896.0 636 71.7
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 2.9e-258 895.2 635 70.1
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 8.5e-258 893.6 636 73.7
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 3.2e-257 891.7 636 71.2
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 4.2e-257 891.3 635 71.0
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 7.2e-257 890.6 636 71.4
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 3.6e-256 888.3 625 71.5
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 4.7e-256 887.9 611 73.8
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 3.9e-255 884.8 635 70.9
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 5.2e-255 884.4 637 70.3
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 1.1e-252 876.7 635 69.4
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 9.1e-252 873.6 636 69.0
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 2.6e-251 872.1 635 69.0
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 7.7e-251 870.5 635 68.8
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 3.2e-249 865.1 635 68.8
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 9.4e-249 863.6 635 68.7
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 2.1e-248 862.4 637 67.7
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 2.7e-248 862.1 625 70.2
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 4.7e-248 861.3 634 68.1
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 1.4e-247 859.8 635 67.1
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 1.8e-247 859.4 634 68.1
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.0e-247 858.2 636 68.2
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 9.7e-246 853.6 608 70.1
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 9.7e-246 853.6 725 62.5
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 3.5e-243 845.1 635 65.7
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 2.9e-242 842.0 635 66.1
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 1.9e-241 839.3 632 65.2
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 9.4e-241 837.0 635 65.2
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 1.2e-240 836.6 631 67.8
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 6.1e-240 834.3 635 65.0
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 2.3e-239 832.4 634 65.6
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 4.0e-239 831.6 635 64.1
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 6.8e-239 830.9 635 64.3
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 2.6e-238 828.9 635 64.3
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 4.4e-238 828.2 596 70.8
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 2.2e-237 825.9 635 63.9
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 8.3e-237 823.9 636 64.9
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 2.6e-230 802.4 637 66.1
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 2.7e-227 792.3 638 62.1
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 7.8e-227 790.8 638 62.2
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 3.8e-226 788.5 644 64.0
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.3e-225 784.3 635 64.9
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 1.6e-224 783.1 635 61.9
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.6e-224 783.1 647 64.0
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 1.7e-221 773.1 639 61.0
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.8e-220 769.6 656 62.7
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 1.1e-217 760.4 592 66.4
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.9e-217 759.6 651 63.0
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 2.2e-213 746.1 647 61.1
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 7.8e-211 737.6 613 63.0
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 5.6e-209 731.5 636 63.8
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 9.5e-209 730.7 501 72.5
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.1e-204 717.2 747 54.4
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 2.4e-199 699.5 630 59.5
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 6.6e-186 654.8 643 55.8
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 7.3e-185 651.4 597 58.0
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 2.0e-182 643.3 635 55.4
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 3.4e-182 642.5 660 55.8
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 3.9e-178 629.0 630 50.6
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 3.0e-162 576.2 565 50.6
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 2.8e-160 569.7 410 70.2
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.8e-160 569.7 565 50.1
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 4.5e-158 562.4 438 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 3.7e-144 516.2 640 44.2
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 3.4e-142 509.6 295 85.8
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 2.1e-139 500.4 441 59.4
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 5.7e-137 492.3 625 43.7
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 1.7e-136 490.7 636 41.7
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 1.0e-133 481.5 547 49.4
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 2.2e-125 453.8 635 43.6
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 7.2e-124 448.7 284 77.1
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 1.3e-120 438.0 402 59.0
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 2.2e-120 437.2 309 70.6
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 4.0e-114 416.4 292 70.9
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 2.6e-113 413.7 279 76.0
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 2.0e-105 387.5 225 86.2
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 8.6e-101 372.1 254 74.8
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 1.2e-83 315.1 247 62.8
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 4.9e-80 303.1 232 65.1
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 6.4e-80 302.8 217 68.2
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 2.0e-65 254.6 194 64.4
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 8.7e-61 239.2 134 87.3
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 2.4e-58 231.1 158 69.6
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.9e-55 221.5 175 66.9
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 4.6e-54 216.9 163 68.1
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 7.9e-54 216.1 172 64.5
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 1.3e-53 215.3 714 28.4
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 3.7e-51 207.2 136 76.5
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.5e-46 190.7 177 59.3
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.8e-43 181.0 107 86.9
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 4.5e-41 173.7 617 26.6
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 8.2e-35 152.9 118 61.9
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 7.7e-25 119.8 94 62.8
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 2.4e-18 98.2 352 27.0
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 4.1e-18 97.4 93 51.6
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 4.1e-18 97.4 58 79.3
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 1.2e-17 95.9 139 44.6
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 7.7e-17 93.2 73 54.8
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 1.7e-16 92.0 66 65.2
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 2.7e-14 84.7 176 33.5
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.0e-13 82.8 65 69.2
Potri.006G132501 Populus trichocarpa HOM05D006139 ORTHO05D007681 3.4e-12 77.8 77 54.5
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.8e-11 73.9 67 50.7
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.2e-09 69.3 69 56.5
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 4.2e-07 60.8 53 66.0


User provided reference genes

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