Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 7.9e-64 246.9 121 100.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 7.9e-64 246.9 121 100.0
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.0e-43 179.1 100 82.0
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 3.8e-42 174.9 120 74.2
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 3.0e-39 165.2 121 69.4
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.9e-33 146.0 100 73.0
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 6.8e-31 137.5 100 70.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.8e-31 137.5 100 68.0
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.8e-31 137.5 100 68.0
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.5e-30 136.3 100 69.0
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 3.4e-30 135.2 100 68.0
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 9.8e-30 133.7 100 66.0
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.3e-29 133.3 100 67.0
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 2.9e-29 132.1 100 66.0
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 3.2e-28 128.6 100 65.0
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.1e-28 128.3 100 62.0
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 5.4e-28 127.9 99 65.7
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 5.4e-28 127.9 100 65.0
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 9.2e-28 127.1 97 66.0
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.0e-27 125.9 100 65.0
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.0e-27 125.9 100 65.0
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 7.8e-27 124.0 100 63.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.8e-27 124.0 100 63.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.8e-27 124.0 100 63.0
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 7.8e-27 124.0 100 63.0
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.0e-23 113.6 100 57.0
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.0e-22 109.4 100 57.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.0e-22 109.4 100 57.0
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 2.0e-22 109.4 100 57.0
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 4.4e-22 108.2 101 52.5
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.3e-21 106.7 100 56.0
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.1e-20 103.6 79 64.6
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.4e-20 102.4 74 67.6
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 5.4e-20 101.3 73 68.5
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 9.2e-20 100.5 74 66.2
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 9.2e-20 100.5 100 54.0
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 1.2e-19 100.1 70 67.1
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.6e-19 99.8 100 53.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.6e-19 99.8 100 53.0
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 2.7e-19 99.0 73 65.8
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 6.0e-19 97.8 100 51.0
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 6.0e-19 97.8 84 57.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 7.8e-19 97.4 100 52.0
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 7.8e-19 97.4 100 52.0
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.7e-18 96.3 73 64.4
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 5.0e-18 94.7 54 81.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 5.0e-18 94.7 72 63.9
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.0e-18 94.7 73 64.4
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 8.6e-18 94.0 74 62.2
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 8.6e-18 94.0 74 62.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 8.6e-18 94.0 73 61.6
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 8.6e-18 94.0 73 61.6
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.1e-17 93.6 74 63.5
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.5e-17 93.2 73 63.0
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.5e-17 93.2 72 63.9
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.9e-17 92.8 70 64.3
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.9e-17 92.8 73 61.6
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.9e-17 92.8 73 61.6
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.9e-17 92.8 73 61.6
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 2.5e-17 92.4 50 84.0
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.5e-17 92.4 75 58.7
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.5e-17 92.4 75 61.3
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.5e-17 92.4 74 60.8
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.5e-17 92.4 74 60.8
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 3.3e-17 92.0 100 49.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 3.3e-17 92.0 74 62.2
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 3.3e-17 92.0 74 62.2
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 3.3e-17 92.0 75 60.0
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.3e-17 91.7 74 60.8
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 48.0
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 48.0
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 48.0
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 48.0
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 48.0
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 48.0
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 4.3e-17 91.7 73 61.6
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 4.3e-17 91.7 100 49.0
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.3e-17 91.7 73 61.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.3e-17 91.7 71 62.0
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 5.6e-17 91.3 74 59.5
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 7.3e-17 90.9 71 63.4
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 7.3e-17 90.9 70 64.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 7.3e-17 90.9 70 64.3
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 7.3e-17 90.9 70 64.3
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 7.3e-17 90.9 70 64.3
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 7.3e-17 90.9 70 64.3
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 9.5e-17 90.5 70 61.4
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.2e-16 90.1 70 61.4
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.6e-16 89.7 71 62.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.6e-16 89.7 70 62.9
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.6e-16 89.7 100 49.0
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.6e-16 89.7 70 62.9
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.1e-16 89.4 46 89.1
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.8e-16 89.0 71 59.2
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.8e-16 89.0 73 60.3
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.6e-16 88.6 73 58.9
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.6e-16 88.6 70 61.4
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.6e-16 88.6 70 61.4
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 3.6e-16 88.6 75 57.3
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 4.7e-16 88.2 73 58.9
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 6.2e-16 87.8 70 60.0
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 6.2e-16 87.8 70 60.0
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 8.1e-16 87.4 70 60.0
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.1e-15 87.0 71 59.2
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.4e-15 86.7 74 58.1
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.4e-15 86.7 70 60.0
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 1.4e-15 86.7 70 58.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.4e-15 86.7 69 62.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.8e-15 86.3 73 58.9
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.8e-15 86.3 74 58.1
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 1.8e-15 86.3 75 57.3
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.3e-15 85.9 71 57.7
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 5.2e-15 84.7 69 59.4
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.2e-13 79.3 65 60.0
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 3.7e-13 78.6 69 52.2
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.1e-12 77.0 70 54.3
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.9e-12 76.3 50 70.0
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 1.2e-11 73.6 73 52.1
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.1e-11 72.8 64 54.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 4.6e-11 71.6 68 51.5
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 1.9e-09 66.2 40 75.0
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.9e-09 66.2 71 45.1
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.1e-07 60.5 65 43.1
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.1e-07 60.5 67 43.3
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.1e-07 58.9 67 41.8
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 4.0e-07 58.5 107 32.7
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 4.0e-07 58.5 107 32.7
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 4.0e-07 58.5 107 32.7
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 6.8e-07 57.8 112 32.1
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 6.8e-07 57.8 71 38.0
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 6.8e-07 57.8 107 31.8
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 6.8e-07 57.8 107 31.8
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 6.8e-07 57.8 107 31.8
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 6.8e-07 57.8 107 31.8
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 6.8e-07 57.8 112 31.2
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 6.8e-07 57.8 112 31.2
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 8.9e-07 57.4 107 31.8
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 8.9e-07 57.4 107 31.8
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 8.9e-07 57.4 107 31.8
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 1.2e-06 57.0 112 31.2
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 1.5e-06 56.6 31 83.9
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 1.5e-06 56.6 107 31.8
Sed0020458 Sechium edule HOM05D004669 ORTHO05D005767 1.5e-06 56.6 74 40.5
HPP92_024438 Vanilla planifolia HOM05D004669 ORTHO05D005767 1.5e-06 56.6 107 30.8
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 2.6e-06 55.8 107 30.8
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 3.4e-06 55.5 107 30.8
Sed0010016 Sechium edule HOM05D004669 ORTHO05D005767 3.4e-06 55.5 95 35.8
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 4.4e-06 55.1 107 30.8
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 4.4e-06 55.1 107 31.8
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 4.4e-06 55.1 107 30.8
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 5.8e-06 54.7 107 31.8
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 5.8e-06 54.7 107 30.8
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 7.6e-06 54.3 107 30.8
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 7.6e-06 54.3 100 34.0
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 7.6e-06 54.3 107 29.0
Sed0001284 Sechium edule HOM05D004669 ORTHO05D005767 7.6e-06 54.3 95 35.8
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 7.6e-06 54.3 87 29.9
EL10Ac9g21952 Beta vulgaris HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 30.8
CiPaw.02G154600 Carya illinoinensis HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 30.8
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 30.8
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 30.8
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 30.8
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 29.9
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 30.8
Nn8g39375 Nelumbo nucifera HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 31.8
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 9.9e-06 53.9 99 31.3
Sabra01G0138300 Salix brachista HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 29.9
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 31.8
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 31.8
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 9.9e-06 53.9 107 29.9


User provided reference genes

Program Settings