Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 4.7e-120 434.5 213 100.0
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.3e-34 149.8 213 40.8
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.0e-34 149.1 253 38.7
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-33 145.6 270 35.9
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 4.4e-33 145.6 270 35.9
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.1e-31 139.4 241 36.9
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.2e-30 137.5 241 39.0
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.6e-30 137.1 238 37.4
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 7.7e-30 134.8 243 35.0
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.3e-29 134.0 220 37.3
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 6.6e-29 131.7 243 35.8
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 8.6e-29 131.3 259 35.5
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.5e-28 130.6 232 36.6
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.5e-28 130.6 243 36.6
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 3.3e-28 129.4 231 35.5
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 8.0e-27 124.8 252 33.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 4.0e-26 122.5 271 32.8
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 5.2e-26 122.1 246 34.6
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 5.2e-26 122.1 223 37.7
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.2e-26 122.1 234 36.3
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 6.8e-26 121.7 209 36.8
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 6.8e-26 121.7 248 32.7
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 8.9e-26 121.3 213 35.7
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.5e-25 120.6 241 35.7
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-25 120.2 227 32.6
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 2.6e-25 119.8 216 34.3
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.3e-24 117.5 248 30.6
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.2e-24 116.7 211 34.1
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 2.2e-24 116.7 240 32.5
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 3.7e-24 115.9 211 35.5
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 8.3e-24 114.8 257 33.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-23 114.4 211 34.6
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.4e-23 114.0 251 31.9
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.4e-23 114.0 211 35.1
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.4e-23 114.0 244 32.8
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.8e-23 113.6 221 36.7
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.1e-23 112.5 252 31.0
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 5.4e-23 112.1 211 35.1
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.4e-23 112.1 261 31.4
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 5.4e-23 112.1 222 34.2
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 9.2e-23 111.3 248 29.8
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 1.2e-22 110.9 252 31.3
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.2e-22 110.9 211 35.1
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 1.6e-22 110.5 206 34.0
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-22 110.2 259 29.7
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 3.5e-22 109.4 214 32.7
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 3.5e-22 109.4 206 34.0
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 3.5e-22 109.4 236 32.2
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 5.9e-22 108.6 256 31.6
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 7.8e-22 108.2 212 34.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.0e-21 107.8 241 32.4
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.0e-21 107.8 206 34.0
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.3e-21 107.5 200 34.5
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.7e-21 107.1 259 29.7
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.3e-21 106.7 206 31.6
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.3e-21 106.7 206 31.6
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 3.0e-21 106.3 273 31.9
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 6.6e-21 105.1 222 32.9
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.1e-20 104.4 257 30.7
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.1e-20 104.4 255 27.8
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 1.9e-20 103.6 220 32.7
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.9e-20 103.6 246 33.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 5.6e-20 102.1 263 31.2
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 2.8e-19 99.8 197 31.0
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 4.7e-19 99.0 262 29.4
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 6.2e-19 98.6 233 30.9
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.4e-18 97.4 206 32.5
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.4e-18 97.4 243 29.2
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.1e-18 96.3 213 31.0
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.0e-18 95.9 233 30.5
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.9e-18 94.7 287 28.2
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.2e-17 94.4 224 31.7
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 1.5e-17 94.0 226 31.4
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 1.5e-17 94.0 229 30.6
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.0e-17 93.6 302 27.5
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 3.4e-17 92.8 140 37.1
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.4e-17 92.4 108 46.3
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 1.7e-16 90.5 137 38.7
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.7e-16 90.5 234 33.8
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.7e-16 90.5 219 30.1
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 2.2e-16 90.1 227 28.6
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.9e-16 89.0 212 30.7
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.4e-15 87.4 159 37.1
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 2.4e-15 86.7 231 30.7
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-14 84.3 253 27.7
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.0e-14 83.6 155 38.7
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.7e-14 83.2 211 30.3
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 4.6e-14 82.4 133 39.8
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 7.8e-14 81.6 271 27.3
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 2.3e-13 80.1 277 27.4
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 2.3e-13 80.1 155 34.2
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.0e-13 79.7 213 25.8
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 3.9e-13 79.3 218 28.4
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 3.9e-13 79.3 217 29.5
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 3.9e-13 79.3 134 38.1
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.9e-13 79.3 220 30.5
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 5.0e-13 79.0 149 30.2
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 1.5e-12 77.4 85 51.8
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 1.5e-12 77.4 144 33.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 1.9e-12 77.0 155 30.3
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 2.5e-12 76.6 144 32.6
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 2.5e-12 76.6 209 29.2
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 4.3e-12 75.9 114 38.6
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.3e-12 75.9 141 33.3
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 4.3e-12 75.9 117 39.3
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 5.6e-12 75.5 139 35.3
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 7.3e-12 75.1 143 34.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.2e-11 74.3 216 27.3
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.2e-11 74.3 129 35.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.2e-11 74.3 297 25.3
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.2e-11 74.3 165 32.1
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.6e-11 73.9 154 31.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.6e-11 73.9 131 32.8
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.1e-11 73.6 154 31.2
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 2.1e-11 73.6 232 27.2
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.8e-11 73.2 130 34.6
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.8e-11 73.2 135 36.3
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 2.8e-11 73.2 129 34.9
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 3.6e-11 72.8 129 35.7
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 6.2e-11 72.0 144 34.0
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.1e-10 71.2 130 33.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 1.8e-10 70.5 116 35.3
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.0e-10 69.3 154 30.5
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 4.0e-10 69.3 108 38.0
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 6.8e-10 68.6 138 32.6
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 1.5e-09 67.4 100 37.0
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.5e-09 67.4 134 35.1
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 2.0e-09 67.0 185 30.8
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 3.4e-09 66.2 115 33.0
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 3.4e-09 66.2 115 33.0
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.4e-09 65.9 208 25.5
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 7.5e-09 65.1 130 30.0
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 9.8e-09 64.7 195 27.2
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 9.8e-09 64.7 163 31.3
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 9.8e-09 64.7 109 38.5
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 1.7e-08 63.9 173 26.0
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 2.2e-08 63.5 119 32.8
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 2.2e-08 63.5 119 32.8
Rhsim05G0193300 Rhododendron simsii HOM05D022761 ORTHO05D022494 2.9e-08 63.2 96 35.4
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 3.7e-08 62.8 175 26.9
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 4.9e-08 62.4 193 28.0
RhsimUnG0081700 Rhododendron simsii HOM05D022761 ORTHO05D022494 4.9e-08 62.4 97 35.1
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 6.4e-08 62.0 119 30.3
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 8.3e-08 61.6 140 35.7
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.1e-07 61.2 199 26.6
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.4e-07 60.8 195 26.2
Thecc.05G039400 Theobroma cacao HOM05D014374 ORTHO05D020491 1.9e-07 60.5 260 25.0
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.4e-07 60.1 115 29.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.2e-07 59.7 171 28.7
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 3.2e-07 59.7 117 29.1
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 7.1e-07 58.5 205 26.3
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 9.2e-07 58.2 195 25.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 9.2e-07 58.2 117 28.2
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 9.2e-07 58.2 117 28.2
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 9.2e-07 58.2 120 32.5
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.6e-06 57.4 70 47.1
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 2.7e-06 56.6 130 33.1
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.7e-06 56.6 215 27.9
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 4.6e-06 55.8 102 33.3
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 6.0e-06 55.5 96 32.3


User provided reference genes

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