Gene: Sopen11g030740

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g030740
  • Transcript Identifier Sopen11g030740.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 66097065-66100875 : positive

Gene Family Information

  • ID HOM05D006496
  • #Genes/#Species 123/68
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g030740.1

Descriptions

  • Description Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. Interacts with arginine methyltransferase 11. (AtPRMT11 | methyl-CPG-binding domain 7 (MBD7) | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Methyl-CpG DNA binding
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080167
ISO
PLAZA Integrative Orthologyresponse to karrikin AT5G59800
GO:1901537
ISO
PLAZA Integrative Orthologypositive regulation of DNA demethylation AT5G59800

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT5G59800
GO:0008327
ISO
PLAZA Integrative Orthologymethyl-CpG binding AT5G59800
GO:0019899
ISO
PLAZA Integrative Orthologyenzyme binding AT5G59800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G59800
GO:0010369
ISO
PLAZA Integrative Orthologychromocenter AT5G59800
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G59800

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR016177 DNA-binding domain superfamily
IPR001739 Methyl-CpG DNA binding
Mapman id Description
12.5.3.2.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.methylation reader component MBD7