Gene: AT3G46580
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G46580
- Transcript Identifier AT3G46580.1
- Gene Type Coding gene
- Location Chr3 : 17148397-17149328 : positive
Gene Family Information
- ID HOM05D004190
- #Genes/#Species 169/77
- Phylogenetic origin
- ID ORTHO05D004692
- #Genes/#Species 173/77
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G46580.1
- symbol MBD5
- Alias ATMBD5,MBD05,METHYL-CPG-BINDING DOMAIN PROTEIN 05
- uniprot Q9SNC0
Descriptions
- Description methyl-CPG-binding domain protein 5
- Computational description methyl-CPG-binding domain protein 5 (MBD5); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: perinucleolar chromocenter; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 6 (TAIR:AT5G59380.1); Has 120 Blast hits to 118 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 4; Plants - 49; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008327 | IDA ISS | Gene Ontology | methyl-CpG binding | 1 |
| GO:0019899 | IPI | Gene Ontology | enzyme binding | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0043621 | IDA | Gene Ontology | protein self-association | 3 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 4 |
| GO:0000792 | IDA | Gene Ontology | heterochromatin | 5 |
| GO:0010370 | IDA | Gene Ontology | perinucleolar chromocenter | 2 |
| GO:0005694 | IEA | GOA Database | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.5.4.2 | Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD5-6) |