Gene: Nitab4.5_0009215g0030

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0009215g0030
  • Transcript Identifier Nitab4.5_0009215g0030.1
  • Gene Type Coding gene
  • Location Nitab4.5_0009215 : 37694-41594 : positive

Gene Family Information

  • ID HOM05D006496
  • #Genes/#Species 123/68
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0009215g0030.1
  • SR1-identifier Nta13g04030.1

Descriptions

  • Description Methyl-CpG DNA binding, DNA-binding domain
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080167
ISO
PLAZA Integrative Orthologyresponse to karrikin AT5G59800
GO:1901537
ISO
PLAZA Integrative Orthologypositive regulation of DNA demethylation AT5G59800

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT5G59800
GO:0008327
ISO
PLAZA Integrative Orthologymethyl-CpG binding AT5G59800
GO:0019899
ISO
PLAZA Integrative Orthologyenzyme binding AT5G59800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G59800
GO:0010369
ISO
PLAZA Integrative Orthologychromocenter AT5G59800
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G59800

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016177 DNA-binding domain superfamily
IPR001739 Methyl-CpG DNA binding
Mapman id Description
12.5.3.2.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.methylation reader component MBD7