Gene: Carub.0008s2046

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s2046
  • Transcript Identifier Carub.0008s2046.1
  • Gene Type Coding gene
  • Location scaffold_8 : 10322549-10324258 : negative

Gene Family Information

  • ID HOM05D006496
  • #Genes/#Species 123/68
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s2046.v1.1
  • pacid 39250149
  • synonym Carubv10026739m.g

Descriptions

  • Description PTHR12396//PTHR12396:SF9 - METHYL-CPG BINDING PROTEIN, MBD // METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 7
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080167
ISO
PLAZA Integrative Orthologyresponse to karrikin AT5G59800
GO:1901537
ISO
PLAZA Integrative Orthologypositive regulation of DNA demethylation AT5G59800

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT5G59800
GO:0008327
ISO
PLAZA Integrative Orthologymethyl-CpG binding AT5G59800
GO:0019899
ISO
PLAZA Integrative Orthologyenzyme binding AT5G59800

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G59800
GO:0010369
ISO
PLAZA Integrative Orthologychromocenter AT5G59800
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G59800

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016177 DNA-binding domain superfamily
IPR001739 Methyl-CpG DNA binding
Mapman id Description
12.5.3.2.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.ROS1-recruitment complex.methylation reader component MBD7