Gene: Sopen11g027450

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g027450
  • Transcript Identifier Sopen11g027450.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 63135343-63140144 : positive

Gene Family Information

  • ID HOM05D004190
  • #Genes/#Species 169/77
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g027450.1

Descriptions

  • Description Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | methyl-CPG-binding domain 6 (MBD6) | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Methyl-CpG DNA binding | BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain protein 5
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G46580
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT5G59380
GO:0008327
ISO
PLAZA Integrative Orthologymethyl-CpG binding AT3G46580
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT3G46580
GO:0019899
ISO
PLAZA Integrative Orthologyenzyme binding AT3G46580

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G46580
GO:0000792
ISO
PLAZA Integrative Orthologyheterochromatin AT3G46580
GO:0010370
ISO
PLAZA Integrative Orthologyperinucleolar chromocenter AT3G46580
GO:0005731
ISO
PLAZA Integrative Orthologynucleolus organizer region AT5G59380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001739 Methyl-CpG DNA binding
IPR016177 DNA-binding domain superfamily
Mapman id Description
12.5.4.2 Chromatin organisation.DNA methylation.cytosine methylation reader activities.methylation reader (MBD5-6)