Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.9e-144 515.4 288 100.0
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 2.6e-113 412.5 286 78.0
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.4e-113 411.8 288 75.7
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 7.6e-113 411.0 288 80.9
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.9e-111 406.4 289 79.6
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 5.4e-111 404.8 288 76.0
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.2e-110 403.7 288 77.1
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 2.1e-110 402.9 288 78.1
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.5e-110 402.1 288 75.0
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.5e-108 396.7 288 75.7
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 7.3e-108 394.4 288 73.6
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.6e-107 393.3 288 73.3
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.8e-107 392.5 288 74.7
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 2.8e-107 392.5 264 78.0
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.8e-107 392.5 288 75.3
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 2.8e-107 392.5 288 74.7
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 3.6e-107 392.1 288 73.3
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.8e-107 391.7 288 73.6
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.8e-107 391.7 288 73.6
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.1e-106 390.6 288 73.6
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 1.1e-106 390.6 281 78.3
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.4e-106 390.2 288 75.0
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.8e-106 389.8 288 72.6
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.4e-106 389.4 286 73.4
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.0e-106 388.7 289 76.5
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 5.3e-106 388.3 289 76.5
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 5.8e-105 384.8 288 74.7
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 5.8e-105 384.8 290 72.8
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 7.6e-105 384.4 316 70.9
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 9.9e-105 384.0 288 72.6
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 9.9e-105 384.0 288 76.7
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.7e-104 383.3 288 72.9
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 3.8e-104 382.1 288 76.0
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 1.1e-103 380.6 288 71.9
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 1.4e-103 380.2 288 71.5
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 3.2e-103 379.0 286 74.1
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.2e-103 378.6 289 73.7
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 4.2e-103 378.6 290 73.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 5.4e-103 378.3 289 75.1
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 9.3e-103 377.5 287 74.9
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 2.1e-102 376.3 288 75.0
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 4.6e-102 375.2 289 72.3
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.0e-101 374.0 288 73.3
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 2.3e-101 372.9 288 71.9
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.9e-101 372.1 287 74.6
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 3.9e-101 372.1 288 71.9
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 3.9e-101 372.1 286 73.4
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 6.6e-101 371.3 288 72.2
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.1e-100 370.5 286 73.8
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 3.6e-99 365.5 305 66.9
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 4.8e-99 365.2 288 71.5
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 6.2e-99 364.8 301 68.8
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 6.2e-99 364.8 288 71.9
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 6.2e-99 364.8 286 70.6
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 8.1e-99 364.4 286 69.6
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.5e-97 360.1 308 67.5
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 2.6e-97 359.4 288 69.4
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.3e-96 357.1 296 70.9
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 1.3e-96 357.1 288 69.1
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.7e-96 356.7 288 69.1
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 6.4e-96 354.8 287 68.6
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.1e-95 354.0 288 69.1
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.4e-95 353.6 268 75.0
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 4.2e-95 352.1 288 71.2
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 4.2e-95 352.1 289 68.5
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 4.2e-95 352.1 288 68.4
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 5.5e-95 351.7 302 65.9
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.0e-93 347.4 294 69.0
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 1.8e-93 346.7 272 71.7
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 6.7e-93 344.7 282 69.9
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 1.9e-92 343.2 288 67.0
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 3.3e-92 342.4 268 71.6
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 7.4e-92 341.3 240 77.9
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 6.2e-91 338.2 289 71.6
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.1e-90 337.4 239 74.1
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.0e-89 333.2 286 65.0
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 5.8e-89 331.6 286 69.2
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 3.8e-88 328.9 288 66.3
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 6.5e-88 328.2 239 72.0
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 1.1e-87 327.4 288 66.0
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 5.5e-87 325.1 286 64.7
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.2e-86 323.9 288 64.6
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 2.7e-86 322.8 239 70.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 6.0e-86 321.6 239 71.1
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 6.0e-86 321.6 239 71.1
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 7.9e-86 321.2 260 70.0
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.8e-85 320.1 263 69.2
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.8e-85 320.1 263 69.2
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 5.1e-85 318.5 239 72.8
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 5.1e-85 318.5 263 68.8
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 5.1e-85 318.5 263 68.8
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 5.1e-85 318.5 286 62.6
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 5.1e-85 318.5 288 64.6
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 2.5e-84 316.2 239 72.8
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.5e-84 316.2 239 72.4
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 4.3e-84 315.5 239 69.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 4.3e-84 315.5 239 69.9
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 5.7e-84 315.1 239 72.4
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 7.4e-84 314.7 239 72.4
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 9.6e-84 314.3 239 69.0
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.6e-83 313.5 261 65.9
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 2.8e-83 312.8 239 69.0
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 4.8e-83 312.0 268 67.2
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 2.2e-80 303.1 279 62.4
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 8.5e-80 301.2 239 67.4
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 7.9e-78 294.7 246 68.7
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.5e-76 290.4 211 79.1
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.3e-76 288.9 260 64.2
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.6e-75 287.0 262 66.8
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.6e-70 269.2 287 55.7
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 5.7e-68 261.9 294 57.5
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.3e-67 260.8 281 55.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 6.9e-66 255.0 281 55.5
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 1.2e-65 254.2 153 88.9
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 3.4e-65 252.7 153 88.2
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 6.1e-62 241.9 288 51.4
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.9e-56 223.0 232 59.1
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.0e-53 212.6 187 64.2
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.4e-52 209.1 243 54.3
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 3.1e-50 203.0 206 53.4
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.9e-48 196.4 192 58.3
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.1e-47 194.5 262 45.0
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.1e-47 194.5 125 80.0
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 7.5e-44 181.8 153 66.0
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.8e-42 177.2 153 64.1
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 4.7e-38 162.5 289 41.2
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.0e-37 159.8 192 52.6
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.4e-34 150.2 198 49.5
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.1e-34 149.8 192 49.5
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 2.1e-30 137.1 243 37.4
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 6.1e-30 135.6 141 59.6
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.8e-29 134.0 67 94.0
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.4e-28 129.8 105 63.8
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 1.3e-24 117.9 137 58.4
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.4e-18 97.1 116 55.2
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 8.6e-16 88.6 137 48.2
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 2.1e-14 84.0 73 56.2
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 4.7e-14 82.8 71 60.6
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 3.7e-11 73.2 42 78.6
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 3.5e-09 66.6 75 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 5.6e-07 59.3 172 29.7
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 9.5e-07 58.5 40 70.0


User provided reference genes

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