Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 4.5e-191 672.5 925 100.0
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 5.1e-187 659.1 925 92.6
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.1e-172 609.0 933 96.9
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.2e-169 600.5 933 97.0
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.1e-131 475.3 943 90.0
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 6.6e-110 402.9 357 63.9
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 2.1e-108 397.9 363 65.0
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 6.4e-97 359.8 295 62.4
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 9.3e-96 355.9 312 63.5
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 3.1e-91 340.9 290 63.8
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 4.0e-91 340.5 309 63.1
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.5e-90 338.6 316 63.3
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 2.2e-89 334.7 304 61.5
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 4.9e-89 333.6 322 62.1
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 4.9e-89 333.6 316 63.6
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.7e-87 327.8 321 57.3
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 7.9e-87 326.2 276 69.6
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.8e-86 325.1 294 59.9
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.3e-86 324.7 310 59.4
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 5.1e-86 323.6 332 56.6
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.9e-85 321.6 362 55.0
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 7.4e-85 319.7 291 63.6
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 9.6e-85 319.3 320 59.4
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.6e-84 318.5 302 56.0
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.1e-84 318.2 307 61.6
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 3.7e-84 317.4 315 59.0
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 6.2e-84 316.6 350 52.9
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 2.4e-83 314.7 311 59.8
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 5.3e-83 313.5 275 62.5
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 6.9e-83 313.2 294 61.6
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.0e-82 311.6 336 56.5
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 3.4e-82 310.8 340 53.2
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.4e-82 310.8 333 57.4
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 5.8e-82 310.1 333 59.8
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 7.6e-82 309.7 237 69.6
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 7.6e-82 309.7 328 57.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.3e-81 308.9 308 58.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.7e-81 308.5 320 55.6
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 2.9e-81 307.8 315 57.1
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.9e-81 307.8 339 56.0
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 3.8e-81 307.4 310 58.7
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.5e-81 306.6 314 58.6
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 8.4e-81 306.2 306 57.5
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.4e-80 305.4 290 59.7
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.4e-80 305.4 306 57.5
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.4e-80 305.4 193 75.1
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.2e-80 303.9 337 51.6
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 5.5e-80 303.5 288 62.8
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 7.1e-80 303.1 270 60.7
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.6e-79 302.0 288 57.6
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 2.1e-79 301.6 275 62.9
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 2.7e-79 301.2 345 56.5
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.5e-79 300.8 265 64.9
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.0e-79 300.1 260 65.0
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.0e-79 300.1 260 65.0
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.0e-78 299.3 300 57.3
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.3e-78 298.1 283 58.0
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.3e-78 298.1 268 57.5
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 6.7e-78 296.6 302 57.3
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 8.7e-78 296.2 260 62.3
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.1e-77 295.8 340 52.6
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.9e-77 295.0 317 53.3
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 4.3e-77 293.9 341 53.1
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.7e-77 293.5 345 55.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 5.7e-77 293.5 279 61.3
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 7.4e-77 293.1 322 55.3
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 9.7e-77 292.7 346 52.6
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.3e-76 292.4 320 56.6
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 4.8e-76 290.4 277 58.8
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 6.3e-76 290.0 340 51.5
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 3.1e-75 287.7 240 63.8
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 4.1e-75 287.3 357 50.7
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 6.9e-75 286.6 348 49.1
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 6.9e-75 286.6 344 49.7
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 9.0e-75 286.2 302 56.0
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.2e-74 285.8 332 51.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 2.6e-74 284.6 320 54.4
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 5.9e-74 283.5 310 51.0
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 6.5e-73 280.0 352 48.9
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 4.2e-72 277.3 325 54.2
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 4.2e-72 277.3 341 50.1
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 4.2e-72 277.3 332 53.0
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 5.5e-72 276.9 325 53.2
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 1.2e-71 275.8 317 55.2
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 4.6e-71 273.9 346 50.3
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.7e-69 266.2 299 55.2
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.4e-67 262.3 310 52.6
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 2.6e-66 258.1 299 53.5
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.3e-65 255.8 270 57.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.9e-65 254.6 325 45.5
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 2.1e-63 248.4 283 56.9
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.7e-60 238.8 296 48.3
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.1e-59 236.1 243 54.3
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.3e-59 233.8 348 49.1
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.6e-55 222.2 147 75.5
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 2.3e-54 218.4 192 57.8
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.5e-53 215.7 149 70.5
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.4e-53 214.2 170 60.0
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.8e-51 208.8 156 66.7
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 1.4e-46 192.6 131 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 4.8e-44 184.1 207 44.4
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.4e-43 182.6 198 51.0
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.0e-41 176.4 186 44.1
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 6.5e-41 173.7 188 47.3
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 4.0e-38 164.5 132 62.9
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 3.1e-35 154.8 95 78.9
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.5e-34 151.4 187 43.3
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.3e-33 149.4 187 43.3
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.5e-32 143.3 113 65.5
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 2.1e-31 142.1 195 39.5
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 3.6e-31 141.4 107 68.2
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 4.7e-31 141.0 209 41.6
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.4e-30 139.4 83 79.5
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.4e-30 139.4 124 61.3
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.8e-30 139.0 98 69.4
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 3.0e-30 138.3 117 59.8
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.0e-30 137.9 104 69.2
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 5.2e-30 137.5 191 36.1
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 6.8e-30 137.1 97 73.2
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.6e-29 135.2 90 72.2
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 7.5e-29 133.7 116 62.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 9.8e-29 133.3 109 64.2
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.0e-26 125.6 105 60.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.5e-24 119.4 106 62.3
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-24 119.0 87 64.4
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.3e-24 118.2 123 53.7
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.3e-24 118.2 76 63.2
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.1e-22 111.7 78 65.4
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.7e-20 105.9 72 72.2
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.0e-17 96.7 204 37.3
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 4.0e-14 84.7 43 93.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.2e-14 84.3 64 64.1
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 8.9e-14 83.6 75 56.0
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 9.8e-13 80.1 151 29.8
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.2e-11 75.1 75 58.7
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.0e-09 70.1 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-09 68.9 44 72.7
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 2.3e-09 68.9 44 72.7
CDE11G0470 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 6.2e-07 60.8 103 35.9
CDE05G1401 Ceratophyllum demersum HOM05D000142 ORTHO05D008707 8.1e-07 60.5 103 35.9
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 1.4e-06 59.7 81 40.7
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.4e-06 59.7 84 38.1
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.8e-06 59.3 121 33.1
Gohir.A04G055200 Gossypium hirsutum HOM05D000142 ORTHO05D007638 1.8e-06 59.3 83 36.1
Gohir.D04G092400 Gossypium hirsutum HOM05D000142 ORTHO05D007638 1.8e-06 59.3 90 35.6
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 1.8e-06 59.3 84 36.9
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 2.3e-06 58.9 84 38.1
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 3.1e-06 58.5 84 39.3
Ah.02g115740 Amaranthus hybridus HOM05D000142 ORTHO05D007638 4.0e-06 58.2 89 39.3
Duzib093G2001 Durio zibethinus HOM05D000142 ORTHO05D007638 4.0e-06 58.2 90 35.6
Potri.006G202000 Populus trichocarpa HOM05D000142 ORTHO05D007638 4.0e-06 58.2 94 35.1
unitig_85.g27337 Utricularia gibba HOM05D000285 ORTHO05D000241 4.0e-06 58.2 77 35.1
unitig_85.g27340 Utricularia gibba HOM05D000285 ORTHO05D000241 4.0e-06 58.2 77 35.1
EL10Ac2g02981 Beta vulgaris HOM05D000604 ORTHO05D004856 5.2e-06 57.8 140 30.0
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 5.2e-06 57.8 95 36.8
unitig_747.g21645 Utricularia gibba HOM05D000285 ORTHO05D000241 5.2e-06 57.8 77 36.4
Eucgr.B01911 Eucalyptus grandis HOM05D001413 ORTHO05D001385 6.8e-06 57.4 121 33.1
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 6.8e-06 57.4 90 34.4
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 6.8e-06 57.4 79 36.7
unitig_62.g23292 Utricularia gibba HOM05D000285 ORTHO05D000241 6.8e-06 57.4 77 35.1
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 8.9e-06 57.0 83 34.9
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 8.9e-06 57.0 79 38.0
HanXRQChr01g0005101 Helianthus annuus HOM05D000285 ORTHO05D000241 8.9e-06 57.0 77 36.4


User provided reference genes

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