Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 1.1e-255 886.3 514 100.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.1e-255 886.3 514 100.0
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 8.7e-253 876.7 514 98.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 3.1e-250 868.2 542 94.3
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.9e-247 859.0 514 98.2
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 4.8e-235 817.8 514 89.5
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 7.7e-233 810.4 510 89.6
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 2.2e-232 808.9 511 89.4
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.9e-232 808.5 514 88.3
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 9.4e-231 803.5 514 88.7
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.6e-230 802.7 510 88.8
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.1e-230 800.8 510 88.6
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.4e-229 799.7 514 88.1
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 5.1e-229 797.7 509 87.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.7e-227 792.7 514 88.1
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 4.1e-226 788.1 513 86.5
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 2.6e-225 785.4 511 86.9
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 5.0e-224 781.2 514 87.0
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 4.2e-223 778.1 527 80.3
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.5e-223 777.7 511 85.9
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 1.6e-222 776.2 514 87.0
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.1e-220 770.0 510 86.1
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.1e-220 770.0 510 86.5
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.8e-219 765.4 512 85.0
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.8e-218 762.7 514 83.5
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 1.2e-217 760.0 514 83.5
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 2.6e-217 758.8 514 84.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.5e-217 758.1 513 85.0
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 7.7e-217 757.3 514 84.0
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 1.0e-216 756.9 514 84.2
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.3e-216 756.5 513 84.8
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.7e-216 756.1 511 84.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 2.2e-216 755.7 511 85.9
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 2.2e-216 755.7 514 84.4
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 2.2e-216 755.7 513 84.8
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 2.9e-216 755.4 514 84.2
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.9e-216 755.4 511 84.3
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 5.0e-216 754.6 514 84.0
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 1.4e-215 753.1 513 83.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.9e-215 752.7 512 84.6
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 3.2e-215 751.9 514 83.1
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 3.2e-215 751.9 513 83.8
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.2e-215 751.5 514 83.1
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 9.4e-215 750.4 513 84.6
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 9.4e-215 750.4 514 83.1
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 1.6e-214 749.6 514 84.2
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 2.1e-214 749.2 513 83.4
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 8.0e-214 747.3 514 84.6
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 8.0e-214 747.3 514 82.1
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.8e-213 746.1 512 85.7
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.9e-213 745.0 514 82.7
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 5.2e-213 744.6 512 83.2
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 6.7e-213 744.2 514 83.1
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.6e-212 742.3 512 83.6
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 5.7e-212 741.1 504 83.5
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 1.3e-211 740.0 511 79.5
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.3e-211 740.0 514 82.7
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.3e-211 740.0 512 83.0
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 4.8e-211 738.0 514 82.9
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 8.2e-211 737.3 514 80.5
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 2.4e-210 735.7 514 80.5
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 2.4e-210 735.7 514 80.2
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 3.1e-210 735.3 511 82.8
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 4.1e-210 734.9 511 81.0
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 4.1e-210 734.9 514 81.9
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 5.3e-210 734.6 511 82.6
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 7.0e-210 734.2 514 81.7
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.6e-209 733.0 514 77.0
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 2.0e-209 732.6 514 81.1
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 3.5e-209 731.9 513 82.3
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 3.5e-209 731.9 504 84.1
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 3.5e-209 731.9 514 80.7
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 4.5e-209 731.5 509 82.5
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 4.5e-209 731.5 509 82.5
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 7.7e-209 730.7 513 81.9
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 7.7e-209 730.7 535 75.5
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.0e-208 730.3 511 82.2
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.7e-208 729.6 536 79.1
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.8e-208 728.4 514 78.4
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 5.5e-207 724.5 514 82.5
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 5.5e-207 724.5 513 79.1
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 2.7e-206 722.2 504 80.0
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.6e-206 721.8 511 79.6
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.4e-205 719.9 514 81.3
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.8e-205 719.5 514 81.1
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 4.0e-205 718.4 504 81.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 8.8e-205 717.2 515 79.6
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 1.3e-203 713.4 514 80.5
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.4e-202 709.1 500 78.8
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.6e-201 706.4 551 72.6
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 2.7e-201 705.7 520 79.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 2.2e-200 702.6 507 79.3
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 8.5e-200 700.7 514 78.2
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-196 689.5 485 82.9
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 6.3e-195 684.5 509 80.0
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 1.1e-194 683.7 511 77.9
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.7e-192 676.4 535 72.5
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.9e-192 675.6 514 73.5
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.2e-191 671.8 525 76.2
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 5.5e-191 671.4 514 75.1
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.4e-189 666.8 557 70.4
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.2e-189 664.8 514 74.7
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 8.9e-189 664.1 484 81.6
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 2.4e-186 656.0 468 84.2
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.3e-184 650.2 511 67.1
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.9e-184 648.7 463 84.2
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.5e-175 620.2 513 75.0
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 9.8e-172 607.4 430 84.2
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 3.9e-168 595.5 435 77.7
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.1e-165 585.9 428 78.5
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.9e-159 566.6 511 65.2
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 5.8e-148 528.5 511 61.8
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 5.1e-144 515.4 408 76.2
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.8e-133 480.3 268 88.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 8.4e-131 471.5 254 91.3
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 9.3e-130 468.0 322 87.0
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 7.1e-122 441.8 331 77.6
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 5.0e-107 392.5 384 58.1
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 2.1e-105 387.1 210 92.4
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 4.7e-105 386.0 210 91.9
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 4.5e-84 316.2 365 64.9
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 1.2e-81 308.1 206 86.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 4.7e-73 279.6 518 44.8
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.3e-70 268.9 257 65.0
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 3.7e-62 243.4 134 91.8
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 3.2e-61 240.4 526 34.4
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.7e-51 208.0 253 43.9
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.3e-42 177.2 99 82.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 4.4e-39 166.8 106 78.3
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 4.2e-37 160.2 80 93.8
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 9.3e-37 159.1 107 79.4
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 9.6e-34 149.1 80 90.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.8e-33 146.7 295 32.2
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 2.6e-31 141.0 175 50.9
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.7e-30 138.3 137 59.9
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-28 131.3 70 88.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 6.6e-27 126.3 69 88.4
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 5.6e-26 123.2 64 89.1
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 5.6e-26 123.2 64 89.1
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 7.4e-26 122.9 100 63.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 7.4e-26 122.9 100 63.0
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 7.9e-20 102.8 56 80.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.5e-18 97.8 56 73.2
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 8.1e-17 92.8 47 89.4
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.4e-13 82.0 41 85.4
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.5e-13 81.3 47 85.1
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 2.7e-12 77.8 41 80.5
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.3e-11 75.5 36 88.9
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 6.7e-11 73.2 122 36.9
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 6.7e-11 73.2 105 40.0
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 3.1e-08 64.3 134 56.7
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.5e-07 62.0 35 77.1


User provided reference genes

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